Lates calcarifer (barramundi perch): 108896499
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Entry
108896499 CDS
T04895
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108896499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108896499
03009 Ribosome biogenesis [BR:
lcf03009
]
108896499
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108896499
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 related factors
108896499
Complex B
108896499
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108896499
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
Helicases
108896499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_7
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
108896499
NCBI-ProteinID:
XP_018551169
UniProt:
A0A4W6BV22
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All DBs
Position
LG5:complement(12944276..12951412)
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDLKPSSAP
SNSTAAPASLPPLKQMVVHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtctggatttgggtgatgactactcgtctagtaagaagaggtct
gacgggagagaccgggaccgtgacagggaccgtgaggaccgctccagggacagggaccga
gatagggatcgggacagggacagagaccgggacagagacctgaagccttccagtgcacca
tctaacagcacggcagccccggcaagcttaccacccctcaagcagatggttgtgcaccag
cagatcaatccgttcaccaacctaccccacacgccgcgctactacgagatcctgaagaag
aggttacagctcccagtgtgggagtataaggaaagcttcagcgatatcatcacacgtcat
cagagctttgtccttgtcggagagactggttctgggaagacaacgcagatcccacagtgg
tgcgttgacatggtgagaggcttgcctggtcctaagcgagcggtggcctgtactcagccc
aggagagtggcagccatgagtgtggctcaaagggtggcagatgaaatggacgtcatgctt
ggacaggaagtcggttactccatccgatttgaggactgtagctctgccaagactatacta
aagtacatgacagatggtatgttactaagagaggctatgaatgacccgctgctggagcga
tatggtgtgatcattctggacgaggcccacgagcgaactctggccacagacatcctgatg
ggagtactcaaggaggtggtgcgtcaaagaccggatctgaaggtgatcgtcatgagtgcc
acactagatgctggaaagttccaggtgtactttgacaactgtcccttgctgactattcct
gggcgtacacaccctgtggagatcttctacacccctgagccagagcgagactacctggag
gcagcaatccgcaccgtcatccagattcatatgtgcgaggaagatgaaggtgactgcctt
ctcttcctcaccggtcaagaggaaattgatgaggcctgcaaacggatcaagcgtgaggta
gatgaccttggacctgaagttggagacatcaaaatcattccactgtattccacgttgcca
ccacagcagcagcaaaggatctttgagccgcctcctccaaggaagcccaacggcgcaata
ggaagaaaggttgtggtatcaacaaacattgctgagacttctctgacaattgatggtgtg
gtgtttgtcattgatcctggattcgccaaacaaaaggtgtacaatcctcgtattagagtt
gagtctttgctcgtcacggccatcagtaaagcttctgcccagcagagggcgggacgagct
ggcagaacacgtccaggaaaatgtttccgcctctacacagagaaggcctacaaaacagag
atgcaggataacacctaccctgagattctccgatccaacctgggatctgttgtgctgcag
ctgaaaaagctcggtattgatgacctggtgcattttgactttatggatccaccagctcct
gaaacactgatgagggccctcgaactgctgaattacctcgcagctctcaacgatgacggt
gacctgacggagctgggctccatgatggcagagtttcccctggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaagctaagaaggcagctgacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctatcacgcc
ttcaaacaaaaccacgagtctaaccagtggtgctatgacaactttgttaactaccgttcg
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
ccccgccggagcacagagttcaccagcagagattactacatcaacatccgccgggcactc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcacagtg
aaagacaaccaagtggtccagctgcacccatctacagtcctggaccacaagcctgagtgg
gtgctctacaatgaatttgtcctcaccaccaagaactacatccgcacttgcacagacatc
aagccagagtggctggtaaagattgcaccccagtactatgaaatgagtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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