KEGG   Lates calcarifer (barramundi perch): 108896558
Entry
108896558         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase theta
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108896558
Enzymes [BR:lcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     108896558
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    108896558
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII Helicase_dom4_arc HHH_5 DUF4332
Other DBs
NCBI-GeneID: 108896558
NCBI-ProteinID: XP_018551255
UniProt: A0AAJ7QAN9
LinkDB
Position
LG5:15306710..15320536
AA seq 2714 aa
MLQVLDAVDPVKPADNNARPATVNRDAREESASSSAFAPSRSLAPVAHNKRESDRVTSQG
PSRAPSSPSWCSSDGKRPGWTADCKDLAQKLLFSEDLEEAERAQRGPKSGPSVPVSVCNN
GQEIKNSQQAGSSNMQKRTSRRKSSPFRKEESASTKNADPPLDVSRDYILFSPTRLAAAM
KRAKLQQSLQNQSASVLTIPTGLELSTLNDTLPQPGIALCAPLEQAEKLLLSSWGLPKPV
LERYQKHGVTHMFEWQAQCLAVGQVLQGGNLVYSAPTSAGKTLVSELLMLKRVLETKRKA
LFILPFVSVAKEKMHYLQSVFEEAGVRVEGYMGSTSAAGGFTALDVAVCTIEKANSLINR
LIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNVTGSLSEGVQIIGMS
ATLPNLSLLASWLGAELYQTDYRPVPLQEHLKVGCNIYDKCLSVVRQFAPALHIKGDDDH
IVSLCYETVREGHSVLLFCPSKNWCEKLADSIAREFYNLRHNDRQGDTDLQPVCLDQEGL
VDVIAQLRRTPAGIDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMVRVLAATSTLS
SGVNLPARRVIIRTPTFNGHLLDPLTYKQMAGRAGRKGVDTTGESVLVCKEAERQKGISL
IKGALQPISSCLVRREGEGVTTSMLRAILEIIVGGVASTPQDVSLYASCSLLAASMKCDS
KRKSNEETNKGAIEACVEWLMENEFISIQKDGQEERYCPTQLGAATLSSSLSPPEALGIF
ADLQRAMKGFVLENDLHILYLITPLYAEWTTIDWYQFFCLWEQLSSSMKRVAELVGVQEG
FLARSVSGKLVAKTEKQRRQMAIHKRFFTTLVLQDLVNEVPLGTVASKYNCNRGQLQSLQ
QSASTYAGMVTVFCKRLGWHNMELLLSQYQTRLSFGVQRELVDLVRVSLLNATRARALYA
QGLCTVAELARATVADVEKALRNAVPFKSSKRAVDESEMEAAERRNLRCVWVTGGRALTE
QEAATEIVSEARLLLQEDLAQLGVRWDPTTLPPGAPAGSSPDDHRSKDTETSSGSYLSSQ
EAQTDNTKGRQEEDRHRKSKGRETGRQREEYKSEKRVAGKNMEKPEGVQEKSKPVEKEES
GRLEVHREEDRIDPEIRQAHNEVPVESGKETKTAETNKKMSMTNETKNLEETQGRQKHTK
SEKEEEEHKKSEGRGVQKSGTGTVSVRPGGQPAKRPIPERSLTQELDEIVSSPQPQSLLD
PQPSPSPMPPPRFRAPISRVEEQQSVSTRTLRGDGCTGEAASPVQPGRLKHSRALSRVLY
SIQTDKCLQDNVETAAQVSTTSPVLQTPATVSAPTNADTLDTSPASVSPASSPLFSPEAK
RRRIEDRQVEKFSSPELYAGDERDEEVEGDVKKGEESFGDSFELDTQTERIIVQQMYQQR
NGNDRGGNEMVETEKMTEEETVGKAVGLEGDTDDGRNELDPDNACPRFNISLTDSQMELI
LNTSHQIFPGPGGGDHVDEDKNEGGGDDNEASTGNQVASESLNRSSSFLFDSLYDSSLLA
GLSPQQILDQSDEEESVGQEVRDERPLPSTQERRRSELLANQEAEQQEAIQWGESSFNLS
EWGDSLFVGEHFLERQSLLRLAERTLKEQEDRHHDAQQTNADRVLPEDQLLDSPKEPRQI
QPDCFLTQKECDKETAKNVTNGKNDNKPDKTQGRMNEEGNQVERKEAKMNLLSDNMPEST
LHCSPGLQEIFDRWPSMSDQSWQNTTTGHAATHTAAANTVDASDQPQPSIQAGGKKGKLN
VQPAAADSDSQLAQPSTHDAVNVRERPGSAGDLIPPTQETPPVTPRVKLTTTSIQSPLTA
QPINQSTPSALPSRKPTAQKYRKSHSGHSSPLSEAADTKPQTGQPKTLPEFQLKSVTRSS
SKTKLLLHGDQNLSPPPRSPSPSSPQLKPPSDAESPVTDDGFTLQLSQDASLCPSNSGTF
SIIDVASDRRLFNTFIKEWKTKERYSLALACEKREHIQQPEGEIGGKHKRAPAARQKLNR
TDGFPVRDSDGLVLIGLSVCWGARDSYYISLQQEQSKGLSSSLAPPPLDDDLPVSERLGQ
VRSCLSRPSAGLRGGVVVTYDIIQVYKTLVLSCGISLAGNCEDPKVACWLLDPGSEERTL
PNMVTVYCPEELPLLDGLGSAHAHCPRVRAATKSVLVHAVMNHLTGLLEKDSMLDLFRSI
EMPSQVCLALLELNGVGFSVEECERQKHVMQAKLTALESQAYNLAGHSFSLTSIDDIAQV
LFLELHLPPNGDVGGSKSKKTLGYTRRGGGRVRLGKQFSTTKDILEKLRPLHPLPGVILE
WRRITNALTKVVFPLQREKQYHPTLAMDRIYPIAQTHTATGRVSFTEPNIQNVPKDFEIC
MPTVVGESPPSQNGCQMTTKPGKNRRSVAPSVTGGAAEQGPAFSVSMRHAFVPFSGGMIL
AADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCIAAEWKGVDPETVNDSLRQQAKQICY
GIIYGMGAKSLGEQMGVEENDAACYIESFKARYKGINAFLKETVKNCIKNGYVQTLMGRR
RYLPGISNTNTHIKAHAERQAVNTTVQGSAADIVKLATVNIQKRLRKTYPTAPLSHQHTH
SGTSQYRAGTSHLRGAFFVLQLHDELIYETREEDLIQVAQIVKREMESAVKLYVKLKAKV
KVGPSWGNLQDLDL
NT seq 8145 nt   +upstreamnt  +downstreamnt
atgctgcaggtgctggatgctgtcgaccctgtaaagcctgcagataacaatgctcgtcca
gcaacagtaaacagagatgcacgggaagagtcagcgtcatcatctgcctttgccccgtca
cggtctctcgcaccagttgcacacaataagagggagagtgacagagttacaagccaggga
cccagcagagcccccagcagccccagttggtgtagcagtgatggtaagagaccagggtgg
acagctgactgcaaagacctcgctcagaagcttctcttcagcgaggatttggaggaggca
gagcgtgctcagaggggtccaaaaagcggcccgtcggtgcctgtgtctgtctgcaataat
ggtcaagaaataaaaaacagtcagcaagcaggcagctccaacatgcagaagcgtacctcc
agaagaaagagctccccttttaggaaagaggaaagtgcatcgactaagaatgctgatcca
cctcttgatgtatccagggactacatcttgttcagccccacgcgcctcgccgctgccatg
aagagggccaaactccagcagtcattacagaatcagtctgcctcagttctcaccatcccc
actggattagagctcagtactctcaatgacactttaccacagccaggcattgccttgtgt
gctcccttggaacaagctgaaaagctgctgttatccagttggggtttgccaaaacctgtc
ctggagcgctaccagaaacacggagtgactcacatgtttgagtggcaggctcagtgcctc
gctgtcggacaggtgctgcagggaggtaacctggtctactctgctcccactagtgctgga
aaaactctggtgtcagagctgctgatgttgaagcgtgtgctggagactaaaagaaaagct
ctctttattttgccatttgtctctgtggccaaagaaaagatgcattatcttcagagtgta
tttgaagaggcaggagttcgcgtggagggatatatgggcagcacttcagctgctggaggg
ttcacagcactggatgtggctgtttgcaccatagaaaaagccaactctctgattaacaga
ctcattgaagaagacagcatgggcctactaggtatggtggtggtggatgagttgcatatg
gttggggattctggaagaggatacctactagaactgctcctgaccaaaatccgctacata
gcacagaagcaaaatgtcacagggtctctgtcagagggtgtacagataataggtatgagc
gccaccttacctaacctctccctcctggcgagctggttgggtgcagagctttaccagaca
gactacagacccgtacccctgcaggagcatctcaaagtgggctgcaacatctacgacaag
tgcctctccgtggtccggcagttcgctcctgcactccacattaagggggatgacgaccac
atagtgagcttgtgttatgagacagtgagagagggccactctgtcctgctcttctgcccc
tcgaagaactggtgtgagaaactggcagacagcatcgctagagaattctacaacctcaga
cataatgatcgtcagggcgacacggacctccagccagtgtgtctggatcaggagggacta
gttgatgtcatagcccagttgagacgaacccccgccgggatagaccccatcctccagcgg
actgtgccatggggggtggccttccaccatgcaggtctgacgtttgatgaacgtgacgtg
ttggagggagcttttcgtcagggcatggtcagagtcctggctgccacttctaccctctct
tcaggggtaaatctcccagcccgcagggttatcatccgaaccccgactttcaatggacac
ttgttggatccgctcacgtacaaacagatggctggacgggcagggagaaaaggagtagac
actacaggtgaaagtgtgttggtttgtaaggaggcagagcgtcagaaaggtattagtctc
attaagggtgctcttcagccaatcagcagctgcctggtgagaagggagggggaaggtgtc
accactagcatgctgagagcaatcctggagatcattgtcggtggtgtagccagcactcca
caggatgtgagcttgtatgcttcgtgctctctactggctgccagcatgaaatgtgacagc
aaacgcaaatcaaatgaagagaccaacaaaggggctattgaggcctgtgtagaatggctg
atggagaatgaatttattagcatccagaaggacggacaagaggagcggtactgtcccact
caacttggtgctgccaccctgtcctcctccctttctccgccggaggctctaggaatattt
gcagatctccagcgtgccatgaagggcttcgtacttgaaaatgatttgcatattctctat
ctgatcaccccgttgtacgcagaatggacgaccatagattggtatcagttcttctgcctc
tgggaacagctctcgtcatcgatgaagagagtagcagagctggtgggcgttcaggaaggt
tttctcgcacggtcagtcagcggcaaacttgtcgccaagacagaaaagcagcgcagacag
atggcaattcataaacggtttttcaccaccctcgtactacaggatctggtgaacgaggtg
cctttgggaacagtggcatctaaatacaactgcaatcgtgggcagttacagtctctgcag
cagtctgcctccacatatgcaggtatggtgacagtgttctgcaagcgtctgggctggcac
aacatggagctgttattgtcccagtaccagaccaggctgagcttcggagttcagagggag
ctggtcgacctggtcagggtgtccctcttgaatgcaacacgagccagagcgctctacgca
caagggctttgtactgttgctgaactagccagggctactgtggctgatgtggagaaagcc
ttaaggaatgcagtcccgttcaagagctctaaacgtgcagtggatgagagtgagatggag
gcggctgagaggcggaaccttcgctgtgtctgggtgactggtggacgggccctgacagaa
caggaagcagccactgagatagtttctgaggcaaggctcctccttcaggaagacctggcc
cagctgggggttcggtgggacccgacaacacttcctcctggggcgcctgccggcagcagc
cctgacgaccatcgcagcaaagatacagaaacctcatctggctcatatctcagttcacaa
gaagcacagactgacaacactaaaggccgccaagaggaagacaggcacaggaaaagtaag
ggtagagagactggcagacagagagaggaatataaaagtgagaaaagagtggctggtaaa
aatatggagaaaccagaaggagtgcaagagaagtccaaacctgttgagaaggaagaaagt
ggaagattggaggtgcacagagaggaggacaggatagacccagaaatcagacaagcacat
aatgaagtaccagtggaaagcggcaaagaaacaaagacagctgagacaaataaaaagatg
tccatgacaaatgaaacaaaaaatctagaagaaacacaaggaagacaaaaacacacaaag
tcagagaaggaagaggaggagcacaaaaaatcagaagggagaggagtccagaaaagtggc
acaggtacagtctcagtcagaccagggggtcaaccagccaaacggcccatccctgaaagg
agcctgacacaggaattggatgagattgtatccagccctcagcctcagtcgctgctagat
cctcagccctcaccttctcctatgccacctcctcgcttcagagccccgatatcccgggta
gaagaacaacagagtgtttccacaaggactttaagaggagatggctgcacaggtgaggca
gcgagccctgtgcagccaggtagactaaagcactcaagagccctaagcagagtcctctac
tccatacaaaccgacaaatgcctacaagataatgtagagactgcagcccaggtgtctacc
actagccctgtgctacagactcctgccacagtttctgctcctaccaatgcagacacattg
gacacatctcctgcgtctgtttctcccgcctcatctcccttattctctcctgaagccaag
cgaagaaggatagaggacagacaggtagaaaagttctcatctcccgagctgtacgcagga
gacgagagagatgaagaagttgagggagacgttaaaaagggagaagagagttttggtgac
agctttgaattggacactcagacagaaagaatcattgttcaacagatgtatcagcaacga
aatgggaatgacagaggagggaatgagatggtagaaacagaaaagatgacagaggaggaa
acagtaggaaaagctgtggggctggagggtgacacagatgacggaagaaatgagcttgac
cctgacaacgcatgtccaagattcaatatctctctcacagatagccagatggagctcatc
cttaacaccagccaccagattttccctggtcctggcggtggcgatcatgtggatgaggat
aaaaatgaaggtggtggggatgataacgaagcctctactggcaatcaggttgcctctgag
agtcttaacagaagcagtagcttcctcttcgacagcctgtacgatagctctctgctggct
ggtctgagcccacagcagatccttgaccaatccgatgaagaggaatctgtcggccaggag
gtgagagacgagcgccctcttccgtcaacccaggaacgacgacgcagtgagcttctcgcc
aaccaggaggcagaacagcaggaggcgatccaatggggcgagtcttccttcaacctgtca
gagtggggagactcgctgtttgtgggcgaacattttctggagaggcaaagcttgctcaga
cttgcagagagaacgctaaaggagcaagaggaccgccatcatgatgctcagcaaaccaac
gcagaccgtgttctgcccgaagatcagctgttagattcaccgaaggaaccccgtcagata
caacctgactgttttttaactcaaaaagagtgtgataaagaaacagctaaaaatgtcact
aatggtaaaaatgacaataaaccagacaagacacagggaaggatgaacgaagaagggaat
caggtagagagaaaggaagcgaaaatgaatcttttgtcagataacatgcctgaaagtact
cttcattgcagccctggtttacaagagatctttgaccgttggcctagtatgtctgaccag
tcctggcaaaacactacaacaggccacgcagccacacacactgctgctgcaaacacagtg
gatgcttcagatcaacctcagccttcgatacaagcgggtggaaaaaagggaaagctaaat
gtgcagcctgctgctgctgacagtgattctcaactggcacaaccgtccacgcatgatgct
gtgaatgtaagagagagaccaggatctgccggtgacctcattccccccacccaggaaacg
ccacctgtcacacccagagtaaaactgaccacaacctcgatccagtcgcctctcaccgcc
cagccaatcaaccagtcaactccttcagcccttccttcacggaaaccaacagcccagaaa
taccgtaaatcccactcaggacacagtagtcctctatcagaggctgctgacactaaaccc
cagacagggcaaccaaaaacactacctgaattccagctgaagtctgttacacgctcaagt
tcaaaaaccaaactcctgctacacggcgaccagaacctcagccctccaccacgctctcct
tctccatcctctccccagctgaagcctccatctgacgcagaatcgcccgtgactgatgac
ggattcaccctacagctgtcccaggatgcttcactctgtcccagcaactccgggaccttc
tccatcatagacgtagcaagtgaccggcgcctcttcaacactttcatcaaagagtggaaa
acaaaggagcgttactctctggctttggcctgcgaaaagagggagcacatacagcagcct
gagggggaaattggagggaaacacaagagagcaccagcagctcgtcagaagctcaacagg
actgatggttttccagtaagagacagtgatggtctggtgttaattggactctctgtctgc
tggggggcaagagattcatattacatatctctgcagcaggagcagagcaaaggtctgagc
tccagtctggcccctcctccactggatgacgatttgccagtaagcgagaggctggggcag
gtgaggtcctgtctgagcaggccgtcggctggtcttagagggggtgtggttgtcacatat
gacattatccaggtgtacaagacactagtcctgagctgtggcatcagcttggcgggcaac
tgtgaagacccaaaggtggcgtgctggctgctggaccctggcagtgaggagaggactcta
cccaacatggtgactgtctactgtcccgaagaattacctctgctggatggactcgggagt
gcgcatgcgcactgtcctcgtgttagggcagcgaccaagagtgtgcttgtgcatgctgtc
atgaaccacctcaccggtctgctggagaaagacagcatgctggatttattcaggagcatt
gagatgccttcccaggtgtgcttggctctgttggaactgaatggagtgggcttcagtgtt
gaggagtgcgagagacaaaaacatgtaatgcaggccaaactcacagcgctggaatctcag
gcgtacaacctggctggacacagcttctccctcaccagcattgacgacatagcacaggtg
ttattcttggagctccacctgcctccaaatggtgatgtgggtggatcaaaaagtaagaag
actctgggctacaccaggagaggcggtggcagagtacggcttggaaagcagttcagcacc
accaaggacattctggagaaacttcgccccctgcacccattgccaggtgtgattctggag
tggaggcggatcactaacgccctgacaaaagtggtgttccccctgcagagggagaagcaa
tatcaccctacgctggccatggacagaatatatcccatcgcccagacacacacagccaca
ggcagagtgagtttcactgagcccaacatacagaacgtccccaaagactttgagatttgc
atgcccacagtggtaggtgaaagccctccttcacaaaatggctgccagatgaccaccaaa
ccaggaaagaatagacgttctgtggcaccttcagttacaggtggagctgcagaacaaggc
cctgccttctctgtcagtatgagacatgcctttgtacctttttcaggtggcatgatacta
gcagctgattattcccagctggagttgagagtattggctcacctgtccaaggatcaacga
cttctacaggtcctgaatggaggagcggacgtgtttcgctgcatcgctgctgagtggaaa
ggcgttgacccagagactgtgaatgatagcctcagacaacaggcaaaacagatttgctat
ggcattatctatgggatgggagccaagtctttgggagagcaaatgggagtggaggagaat
gatgcagcctgctacatagaaagtttcaaagccagatacaaagggatcaatgcttttctt
aaagaaacagtaaagaactgtataaagaacggctatgttcagactctgatgggccgaagg
agatacctacctggaatctccaacacaaatacacacattaaagcacacgctgagcgccag
gcagtgaacacgaccgttcagggctcagcagcagacattgttaaacttgccactgtgaac
attcagaagcggctgcgaaaaacatatcctactgctccactgtctcaccagcacacacac
tcaggtaccagtcagtacagggctgggacgtctcatctgagaggagccttctttgtcctg
cagctgcatgatgaactcatctatgaaactagagaggaagacctcatacaggttgctcag
atagtcaagagggagatggagtctgcagtaaaactgtatgtaaagcttaaggccaaagtc
aaggtgggacccagttgggggaacctgcaggatctagatctataa

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