Lates calcarifer (barramundi perch): 108896577
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Entry
108896577 CDS
T04895
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108896577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108896577
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
RNases
108896577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
Motif
Other DBs
NCBI-GeneID:
108896577
NCBI-ProteinID:
XP_018551288
UniProt:
A0AAJ7VFN7
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Position
LG17:complement(19627079..19638970)
Genome browser
AA seq
1273 aa
AA seq
DB search
MLRSTGFFRGIDCPFYTEYSEGKGSRNGCNRPYCHFRHSQQRRPSYGAPADVKKQRDLHS
VQKAEQGYDPFNPEVVRPQEQQNGKPAASGDLSGALELVNKAIEEVRSEVEREKRKLSRI
GDEPYDPSESSSVSSSGAVKSKTAASHMAYDPGSYQITTGGYNPTPGCSKYTLDSDNQGN
NSNSMEYVPTAVKKPPNRTHAHQLPSPPPSPKYSNSAYSSKCKYTVDNSRPSTDMEYDPL
SNYSAGIAAKSKRVDGARVCRGVKTDGSKTHKPPVSDLSDEEYVVAVKKPRQQSVDTQKY
TFSDSDGESSGTEYRPTSLSNLQQKKGNTGSAGNAFGKERKEGTERVLNALTQRNKEDLA
QDTDFQEDIKRKDNLEKKKVASRTSYEKGVKSEKMHKLEKDGNKTSSSKSSSSSSKDKGS
ITNSNQDSAKKENKSLGKRDDRKDAAKDKTSDKVHREGRDEKRSDGKIKAVEKIKTDSSK
RDKESENGAKESKKPKTLDREKEHNKYKDRQHKNGKLDSSRREKDVKKTSKSSSCSGSSS
SNSKGSSANSNKVKQNINSSNGKKLEDKRQSLSLSHADLFGDESPDEAEPMEVDDDDDAD
EVLVRKSADALKRGRLNKRKASELTPSSSDDEGDCVMVGNSTGKDEVNDIGIDLSGFQDD
LDFDSDPMEECLRIFNESKDVKREDKGRQIKQPSRDSEEEKSTESTLTTLFPGQKKRVSH
FVAKGNTDAPSKTVVRPYKRPTAQEVCYQRMQMAQQQAAQLSASVKAASQSSSPSFSGER
KRIAHRPNPQITSSKTSAKPAVSRGLSPSQTHQTVKAQTTAGILSKTTSTVMSKRVAHTP
SMKSTSMKRPVIPTEFGAKVPTNIRQRYLTTFIDECVKFCPSEEIAFQMALDEEKLVYER
SSSKNIYLNVAVNTLKKLRSKSSSCPSPVTKEPGSAGNRRAQSHEEVLGGRLAATTSFTV
NRMGKQQEEKLTGATLYRKLKTYLMTEEQLQEHGYPRTHPEAAGKAVIYNLPEKKVIADP
FTKICCRCGTEYKINVNGNCVRKEECSFHWGRLRRHKVAGGWETNYNCCSAAVGSPGCQV
AKQHVQDGRKESLDGYVSTFSKSLPPDGNGGVFALDCEMCYTKQGLELTRVTVIDSEMKV
IYDTFVKPESKVVDYNTRFSGVTEEDLESATITLRDVQAVLLSMFSAESILIGHSLESDL
LALKLIHSTVIDTAIVFPHRLGLPYKRALKNLMADHLKRIIQDNVEGHDSSEDATACMEL
MIWKIKEDAKVKR
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgttaagatccaccggcttcttccgagggattgactgcccgttttacacggagtacagc
gagggcaaaggcagccgaaatgggtgtaacagaccgtactgtcacttcaggcacagccag
cagagacggccgtcctacggagcaccagcagatgttaaaaagcaaagggacctccactcc
gtgcagaaagcagaacaaggctatgatcccttcaacccagaagtagtgaggccccaggaa
cagcagaatggaaagcccgctgcctctggagacctcagtggggctctggagctggtcaac
aaggccattgaggaggtccgcagcgaggtggagagggagaagaggaagctctctcggatt
ggggatgaaccatatgatcccagcgagagtagcagtgtgtcttcatctggtgctgttaaa
agtaaaacagcagcttcacacatggcctatgatcccgggagttatcagataacaacggga
ggatataatcccacccctggctgcagcaagtacactttggattcagacaaccaggggaac
aacagtaactccatggaatatgttcccactgcagtgaaaaagcctcccaatcggacacac
gctcaccagctcccgtctcctccccctagcccaaagtattcaaacagtgcatactcttcc
aagtgtaaatacactgtggataattcacgaccgtctacagacatggagtacgacccactc
tctaactactcggcaggaatcgcagcgaaaagcaagagggtcgatggtgcgcgggtgtgc
agaggtgttaagacagacgggagcaagacacacaaaccacccgtgtctgatttgtcagac
gaggagtatgttgtggctgtgaaaaagccacggcagcagagtgtagacacacaaaagtac
actttctctgactctgatggggagagctctgggacagagtatcgacccacctctcttagc
aatctccagcagaaaaaaggcaacactggttcagctggtaacgcttttggaaaagagaga
aaagagggaactgagcgtgtactaaatgcactgacacagaggaataaagaggacttggca
caggacacggacttccaggaagatattaaacgaaaggacaatctagagaaaaagaaggtg
gctagtcgaactagctacgagaaaggtgtcaaatctgagaaaatgcataaacttgaaaaa
gacggaaacaaaacatcaagtagtaagagtagcagcagtagtagtaaggacaaaggttca
ataacgaactcaaaccaggactctgcaaaaaaggagaacaagagtcttgggaagagagat
gatagaaaagatgcagcgaaggataagacaagtgataaagttcatagggagggcagagac
gaaaagagaagtgatggtaaaattaaagctgtggaaaaaattaaaacagactcaagcaaa
cgagataaagagtcagaaaatggtgcaaaggaaagcaagaaacccaaaacattagacagg
gaaaaggaacacaacaagtataaggaccgccaacataaaaacggtaaacttgatagtagt
agaagagaaaaggatgtgaagaagacgagtaaaagcagttcttgtagcgggagcagtagc
agtaacagtaaagggagttctgcaaacagcaataaggtgaagcaaaacatcaactcgtca
aatgggaaaaaacttgaggacaaaaggcaaagtctgagtctgagccacgccgatctgttc
ggagatgagagtccagatgaggctgagccgatggaggtggatgacgacgatgacgcggat
gaagttctggtaagaaaatcagctgatgctctgaagaggggacgtctaaacaagaggaaa
gcgtcagaactgacgccgtcttcctctgacgatgagggtgactgcgtcatggtgggaaac
agcacaggtaaggacgaagtcaacgacattggaatcgacctctccggtttccaggatgat
ctggactttgactcagatcccatggaggagtgtttgcggatcttcaatgaatccaaggac
gtgaagagggaagacaaaggaaggcaaattaaacagccctctagggattcagaggaggag
aaaagcacagagagcactttaactactctcttccctggtcaaaagaagagagtctcccat
tttgttgccaaaggaaatactgacgcaccttctaagactgtggtgcggccgtacaagaga
cccacagcccaggaggtctgctaccagcgaatgcagatggcgcagcagcaagctgctcag
ctctctgcttcagtcaaagctgcctcgcagagctccagccccagcttctctggagagagg
aagagaatagctcaccgtcccaacccacagataacatcctctaaaacaagtgctaaacca
gctgtcagtcgagggttatcccccagccaaactcatcagaccgtcaaggctcaaactaca
gctggtattttgtccaagaccacgtccacagtaatgtcgaagagagtggcgcacacaccc
tccatgaagagtacttcgatgaagcgtcccgtcatccccactgagttcggggccaaagtt
cccaccaacatccgccagcgctacctcaccactttcatagatgaatgtgtcaaattctgc
ccatcagaggaaattgccttccagatggcacttgacgaggagaagctggtgtatgagcgc
agtagcagtaagaacatctacctcaacgtagctgtcaacactctgaagaagctgcgcagc
aagagcagctcctgtccgtcacctgtcaccaaggaaccggggtcagctggtaacaggagg
gcccagtcccatgaggaagtgctggggggtcgtctggctgctacaaccagcttcactgtc
aacaggatgggtaaacagcaggaggagaaactcactggagccacactgtacaggaagctg
aagacgtacctgatgacagaggagcagctccaggagcatggatacccaagaacacacccg
gaggctgctggcaaggcagtcatatacaacctcccagagaaaaaggtcatcgcagatccg
ttcaccaagatatgttgccgatgtggaacagaatataagatcaatgtcaatggcaactgt
gtacggaaagaggagtgtagttttcactggggacgtttacgtagacataaagtcgctgga
ggctgggagaccaactataactgctgctctgctgctgtgggctctccgggttgccaggtt
gccaagcaacatgttcaggacgggcgtaaagagtcattagacggctatgtatcaacattc
agtaaatctcttccaccagacggtaacggaggggtgtttgctttggactgtgagatgtgt
tacacaaagcagggcctggagctgacaagggtgacggtcatcgactcagagatgaaagtt
atctacgacacatttgtcaaacccgaaagcaaagtggtcgactacaacacacgattttca
ggtgtgacggaggaggatttagagagcgccaccatcaccctgagagatgttcaggccgtg
ctgctcagtatgttcagtgctgaatccattctcataggacacagtttggagagcgacctc
ctcgctctgaagctaatccacagtacagtcatagacacagccattgtgttccctcaccgc
cttggcttaccctacaaacgtgccttgaagaacctgatggctgaccaccttaaacgcatc
atccaggacaacgtggagggccacgactccagcgaagatgcgactgcttgcatggagctg
atgatctggaagatcaaggaggacgcaaaggtcaaaagatga
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