Lates calcarifer (barramundi perch): 108896582
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Entry
108896582 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 2 protein
KO
K06839
slit 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108896582
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Axon guidance molecules
108896582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
LRR_5
Laminin_G_2
LRRNT
Laminin_G_1
LRR_9
LRRCT
hEGF
EGF_TEN
LRR_1
LRR_14
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
Laminin_G_3
LRR_EndoS
EGF_3
EGF_2
Motif
Other DBs
NCBI-GeneID:
108896582
NCBI-ProteinID:
XP_018551304
UniProt:
A0AAJ7QAU1
LinkDB
All DBs
Position
LG5:14744900..14831236
Genome browser
AA seq
1570 aa
AA seq
DB search
MVGALCPVGPGRSPAATALGLPVAVVVLVLVLSGGADGQPCPAQCSCTGTTVDCHGQGLR
SVPRNIPRNTERLDLNANNLTKITKTDFAGLRHLRVLQLMENKITTIERGAFQDLKELER
LRLNRNNLAVFPELLFLGTTKLYRLDLSENQIQGVPRKAFRGAVEIKNLQLDYNHISCIE
DGAFRALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLQCDCHVAWLSEWLRQR
PRLGLYTQCMAPPHLRGHNVAEVQKKEFVCTGHQSSSSSSCSVLQCPESCTCSNNIVDCR
GKGLTEIPTNLPETITEIRLEQNAIKVIPAGAFSPYKKLRRIDLSNNQISELASDAFQGL
RSLNSLVLYGNKITEISKGLFEGLFSLQLLLLNANKIACLRVDAFQDLHNLNLLSLYDNK
LQTIAKGTFSSLRAIQTLHLAQNPFICDCHLKWLADYLQDNPIETSGARCTSPRRLANKR
IGQIKSKKFRCSAREQYFIPGTEDYRSKLGGDCFADLACPEKCRCEGTTVDCSNQKLTKI
PDHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINLSNNRITDIEEGTFEGASGVNEL
ILTSNRLENIHHRMLKGLSGLRTLMLRSNRISCVSNSSFVGLSSVRLLSLYDNQITSMNP
GAFDTLHSLSTLNLLANPFNCNCHLAWLGDWLRRKRIVTGNPRCQNPYFLKEIPIQDVAV
QDFACEDGNDENSCSPVLRCPAECSCLDTVVRCSNKGLTTLPKGLPKETTELYLDGNHFT
QVPVELSNFKHLTLIDLSNNQISTLSNHSLSNMSELLTLILSYNRLRCIPVRAFDGLKSL
RLLSLHGNDISLIPEGAFKDLSSLSHLALGANPLYCDCHMQWLSDWVKSGYKEPGIARCA
GPGDMTDKLLLTTPSKKFTCTGPVDMSVQAKCEPCLSSPCKNDGTCSNDPVHYYRCTCPY
GFKGQNCEEPIHACIGNPCQNGGTCHLKEGEGSNFWCVCPEGFEGDACEINIDDCEDNDC
ENNSTCVDGINNYTCMCSPEYTGELCEEKLDFCAPELNPCQHDSKCILTPQGYKCECTPG
YVGEHCELDYDDCEDNKCQNGGQCIDAINGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDN
HECLNGAQCVVVGTDPSCQCLHGYEGERCETLVSVNFVNRESYLQLPSSLLSPQTNISLQ
IATDEDSGVLLYKGDNDHIAMELYRGRLRVSYDTGSYPPSAIYSVETVNDGSFHAVELVA
ADQTLSLSIDGGPPKSINSISKQSTLNIDSPLYLGGMPERASATGGLSALQHSSGGRNGT
SFHGCLRNLYINGKLQDLGAGLGPGAPSSGTAQSTTRQWLGHGVEPGCQPCQRGACVQGD
CHATGHRGFTCTCHPGWTGALCDQQVNNPCDGNKCIHGTCLPINSYSYSCRCQPGFAGVL
CDEQDQDSANPCSLSHCKHGKCRVSGLGKAYCECNSGYTGEACDREVACRGERVRDVYQR
QQGYAACQTQEKVSRLECRGSCPGGAEGQGTCCTPLRSKRRKYTFQCTDGSSFVQEVEKV
VKCGCTKCSS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggtgggagctctgtgccccgttggccccggccgctccccggcggcgactgcgctaggg
ctgccggtggctgttgtggtcctggtcctggtcctgtccggcggagcggacggccagccc
tgcccagcccagtgttcctgcaccggcactacagtggactgtcacggccaagggctccgc
agcgtgcccaggaacataccccgcaacacggagagactggatctgaatgcaaacaacctc
actaaaatcaccaagacggattttgcaggactgaggcatctgcgagtattgcagctaatg
gagaacaaaatcaccacgatcgagagaggagccttccaggacctgaaggagctagagaga
ctgcgcctgaatcggaataatctggccgtctttcctgagctgcttttcctgggaacgaca
aagctttacagacttgatctcagtgagaaccagattcagggggttccaaggaaagccttc
aggggagctgtggagatcaagaacctccagttggactacaaccacatcagctgtattgag
gatggagctttccgagcattacgtgacctggaagtgctcacactcaacaacaacaacatc
agccgactgtctgtggccagtttcaaccacatgccaaagctcaggacctttcgcctgcac
tccaacaatctgcagtgtgactgccacgtggcctggctgtcagagtggctgcgacaacgc
ccccgtctgggtctttacacgcaatgcatggccccgccacacttgaggggacacaacgtg
gctgaggtgcagaagaaggagtttgtctgcacaggtcaccagtcgtcatcatcttcctcc
tgcagtgtgctacagtgcccagagtcctgcacctgcagtaacaacattgtggactgcaga
gggaagggactgacagaaataccaaccaacctgcctgaaactattactgagatccgactg
gagcagaacgccatcaaggtgatcccagctggggccttttctccttataagaaactgcgc
aggatagacttgagcaacaaccagatatcagagctggcctcggacgccttccaaggtctg
cgctccctgaactctttggtactatatgggaacaagatcactgagatttccaaaggactg
tttgagggactgttttctctgcagctattgttactgaatgctaataagatagcgtgtctg
cgtgtggatgcatttcaggacctccacaacctcaatctgctctcactatatgacaacaaa
ctgcagaccatcgccaagggaaccttctcatcactaagagccatacaaacacttcactta
gcccaaaacccgtttatctgtgactgccatctgaagtggctggctgactacctgcaggac
aatcccatcgagacaagcggtgcccgctgcaccagcccacgacggctcgccaacaaacga
attggacaaatcaagagcaagaagttccgctgctcagctagagaacagtatttcatccca
ggtacagaggattaccgcagcaagctgggaggggactgcttcgccgacctggcctgcccc
gagaagtgccgctgcgagggcaccacggtcgactgctccaaccagaaactcaccaaaata
ccagatcacattcctcaatacaccgcggaactgcgtctcaacaacaatgaattcactgtg
ctcgaggcgaccgggatcttcaaaaagttgcctcagctgaggaagataaacctgagtaat
aatcgtatcactgacatagaggaggggacatttgaaggagcctcgggggtcaatgagttg
attctgacctccaacagactggagaacatacaccaccgtatgctgaaaggactgagcggc
ctccgcacacttatgctgaggagtaaccggatcagctgtgtgagtaacagcagcttcgtg
gggttgagctcggtgcgtcttttgtctctctacgacaatcagatcacctccatgaacccc
ggagccttcgacacactgcactccctgtccacactaaaccttctggctaatcccttcaac
tgtaactgtcacctggcttggctcggggattggctgaggaggaaacgcatcgtcaccggt
aaccctcgctgccagaatccttacttcctgaaggagatccccatccaggacgtagctgtc
caggactttgcctgtgaagacggtaatgatgagaacagctgttctccggtgctgaggtgt
ccagcagagtgttcctgtctggacactgtggtgcgctgcagcaacaagggcctcaccacg
ctgcccaaaggcctgcccaaggaaaccactgaactgtacctggatggtaaccacttcact
caggttcccgtggagctctccaactttaaacacctaacgctcattgacttgagtaacaac
cagatcagcacgttgtccaaccacagcctcagtaacatgtctgagctgcttaccctaatc
ctgagctacaaccgcctgcggtgcataccagtgagggcgttcgatggactcaagtctcta
cgtttgctgtctctccatggtaacgacatatcgctgataccagagggagccttcaaagac
ctgtcatcgctttcccacctggctctgggtgccaaccctctgtactgtgactgccacatg
cagtggctgtcagactgggtaaagagcggctacaaggagccgggcatagcccgctgtgcc
ggaccgggagacatgactgacaaactgctgctcaccacgccttccaagaagttcacctgc
acaggtccagtggatatgagtgttcaggctaagtgtgagccctgcttgtccagcccctgc
aagaatgatggcacctgctccaatgatcctgtgcactactaccgctgcacctgcccctat
ggattcaagggacaaaactgtgaggagcccattcatgcctgcatcggtaacccgtgccag
aacggtggaacttgccacctgaaagaaggagaaggaagcaacttttggtgtgtgtgtcca
gagggctttgaaggcgatgcttgtgagatcaacattgatgactgtgaagacaacgactgt
gagaacaactccacctgtgttgatggaatcaacaactacacatgcatgtgctccccagaa
tacacaggggagctgtgcgaagagaaactggatttctgcgcaccagagctgaacccatgt
cagcatgactcaaagtgcattttgacccctcagggatacaagtgtgagtgcactccaggt
tatgtgggcgagcactgtgagctggactatgatgactgtgaagacaacaagtgtcagaat
ggaggtcagtgcattgatgccatcaacggatacacctgcgtctgtccggagggatacagt
ggcttattctgcgagttctctcccccgatggtccttccccgtaccagcccctgcgacaac
catgagtgtctcaacggggcacagtgcgtcgtcgtgggaacagaccccagctgccagtgt
ctccacggctacgagggcgagcgctgtgagacgctcgtcagcgtcaactttgtcaaccgc
gagtcctacctccagctcccctccagtctcctctcaccacagaccaacatcagcctacag
attgctacagatgaggacagtggcgtgttgttgtataaaggagacaatgatcacattgcc
atggagctgtacaggggacgcctcagggtcagctacgatactgggtcctaccctccttct
gctatatacagcgtggagacagtgaacgatggtagttttcacgcagtggagttggtagca
gcagaccagactctgtctctgtccatcgacggcgggccgcccaaatccatcaactctatc
agcaaacagtccacactcaacatagattccccactttacctgggagggatgccagagcgt
gcctcagccactgggggtttgtcggctctgcagcacagctcaggtgggcgtaacggcacc
agcttccacggctgcctccgtaacctgtacattaacgggaagctccaagacttgggggct
gggctcgggccgggggctcccagctctgggactgcgcagagcaccaccagacagtggctg
ggccacggggtggagccaggctgccagccatgccagagaggcgcctgcgtccagggtgac
tgccacgcaacagggcaccgcggctttacctgcacctgccacccgggctggacaggagca
ctgtgtgaccaacaagtcaataacccctgtgatggcaataagtgtattcatggtacctgc
ctcccaatcaactcctactcttactcctgccgctgccagcctggctttgctggcgttctc
tgtgacgagcaggaccaggattcagcgaacccctgcagtctgtctcactgcaaacatggc
aaatgcagagtgtcgggcctgggcaaagcatactgcgagtgtaacagtggatatacagga
gaggcgtgcgacagagaggtggcctgccgaggggaacgggtccgagatgtctaccagaga
cagcaaggctacgcggcgtgccaaacccaggagaaggtctcccgtctagagtgtcggggc
agctgcccggggggagcagaaggacagggcacctgctgtacccccctccgcagcaaacgc
aggaaatacaccttccagtgcactgatggctcttcttttgtccaggaagtagagaaagtg
gtcaagtgcggctgtacaaagtgctcatcataa
DBGET
integrated database retrieval system
