Lates calcarifer (barramundi perch): 108896614
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Entry
108896614 CDS
T04895
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03410
Base excision repair
lcf03420
Nucleotide excision repair
lcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108896614
03410 Base excision repair
108896614
03420 Nucleotide excision repair
108896614
03430 Mismatch repair
108896614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108896614
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108896614
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108896614
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108896614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
RuvB_N
Rad17
AAA_17
AAA_14
AAA_7
AAA_33
BRCT_2
AAA_16
AAA_18
nSTAND3
NTPase_1
RNA_helicase
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108896614
NCBI-ProteinID:
XP_018551354
UniProt:
A0AAJ7QB27
LinkDB
All DBs
Position
LG5:14944248..14955748
Genome browser
AA seq
1191 aa
AA seq
DB search
MDIRRFFAPTAAKHVVQKPAPNGNLKAEEKKKKKSLSSEEEEVKQKKKETTKVRSSKTEE
KRKDGEKKRKKHAVIVSDSEEEEPVVKLKKSPKDKSPKGKQKTSKATPPPKNDPVHYVSE
TDSDSDNFQSLKKVSKTKQNNTSKQTKSGADSGRPGAKEKVKSPVRPSSAQGKTGVKSPP
APVTPKSAPPPQTKQTPTSVLDYFGSGTVQRSDKKLVASTKRKAPTQDTDDLISDEELAR
QLQMEEDMELEKQVHDDEEFARTLAMVDAEPQAKKARKGSDEKQAPAAIPKKSRTDSAAQ
HQQPSKTNRSVSEDVISPSPKKNPTPAKASSKLALMKKKDEEKDVGPKSKTPISPTKIKT
SPRKEPLTSSSSEMKFTPKTGTTPTALKTSPKKPESTSTSPDDAEKKKVNASAYRNYLNR
DGPRALGSKEIPTGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSKKTTYL
VQGRDSGVSKLEKAESLGTKVLDEDGLLELIRTKPGKKSKYEIVAEAESKASKTKTPPGS
KSTPKAQKISPSKGNSRSPHTPSPSKTGLAQGCGGRTGGGGTPSGRGSGHTARRDLGLSS
SSSSPACSSSAPGPSSPSATEEGASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNW
YKNHSATASKPPPARFGKFGGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEM
NASCTRSKNSLKEVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQE
MIGLIRSSKIPIICMCNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIKIP
PPALNEIILASNQDVRQVIHNLSMWSAKNKVMSYDQCKSDAASARKDMKLGPFDVCRKVF
ALGEEAAHMSLIDKSDLFFHDYSLAPLFVQENYPHVRPAAANGDLKSHLVLLSKTADSIS
DGDLVDRRIRSGQNWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKNSSTNKHSRIV
QELASHMSLKTLSSRQAVNLDYLHYLRQAVLSPLQRHGAEGAGEAVQLLDDYQLIKEDVD
SIMEISVWGGQPDPYSKLDSKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGGESELGG
EDVDNEVQSEDEGDGLKADAMIKQKKAKQPKKEKTEDSGKGKGKGKGKAKK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgactgcagcgaagcatgtggtgcagaaaccagcc
ccgaatggaaacctgaaagcagaggagaagaagaagaagaagtctctgtcttcagaggag
gaggaggtgaaacagaaaaagaaagagaccaccaaggtcagaagctccaaaacagaggag
aaacgcaaggatggtgaaaaaaaacgcaagaaacatgcagtcatagtgtcagactcagag
gaggaggagccagtggtgaagttaaagaaatcccccaaagacaaatctccaaaagggaaa
cagaagaccagcaaggccacgccgcctcccaaaaacgatccagtgcattatgtctctgaa
acagactcagacagtgacaactttcagtctttgaagaaggtttccaaaaccaagcagaac
aacacgtccaaacagacaaagtcaggtgcagacagtggtcgtccgggggccaaagagaag
gtgaagtctcctgtgagaccctcctctgcgcaggggaaaactggggtgaagtctcctcct
gcacccgtcactcctaagtcagccccgcctcctcagaccaaacaaacccccacctcggtg
ctcgactacttcggcagcgggactgttcagcgctcagacaagaagctggtagccagcacc
aaacgaaaggctccaactcaggacacagatgatctgatcagtgatgaggaactggccagg
cagctgcagatggaggaggacatggagctggaaaagcaggtccatgatgatgaggagttt
gccagaacactggccatggtggatgcagagccacaggcaaagaaggctcgtaaaggctct
gatgaaaaacaagcccctgccgccattcccaaaaagagccgcacggactccgctgcgcag
caccagcagccgtcgaagaccaaccggagcgtgtcggaggacgtgatcagtccgtctccg
aagaagaaccccacccctgccaaagccagctccaaactggccttgatgaagaaaaaggat
gaggagaaggacgtagggccgaagagcaagacccccatttcacccacaaaaattaaaacc
tctcccagaaaggagcccctcacttcatcgagctcagagatgaagttcacgcccaaaaca
ggaacaacgcccactgcacttaaaacgtctcccaagaaaccagagagcacaagcacgagt
cccgacgacgctgagaagaagaaagtcaatgcctcggcttacaggaactacctcaaccga
gacggaccacgagccctgggctccaaggaaatccccacgggagcagagaactgtttggag
ggctgtgtgtttgtgttgacgggggtcctcgagtcaatggagagagatgacgccaaatcc
ctcatcgagcgctatggaggcaaggtgacgggtaacgtcagcaaaaagaccacctacctg
gtgcagggcagggacagcggagtctccaagctcgagaaggcggaaagtttaggtacaaag
gtcctggatgaggacggtctgttggagctgatcagaaccaaaccaggaaagaagtccaag
tatgagattgttgcagaggcagagagcaaagcctcaaagaccaagactccccctggctca
aaaagcacccccaaagcccagaagatctctccctctaagggtaactccaggtcccctcac
accccgagcccgtcaaagaccggcctggcacaaggttgcggtggcaggaccggaggtggc
ggcactccgtctgggagaggttcaggtcacacggctcggagggacctgggtctttcctcc
tcctcctcctcccctgcctgttcatcttcagctccaggaccgtcatccccatcagcgacc
gaggagggcgccagtctgctgtgggtggacaagtaccgcccgcgctctctgaagactgtg
attggccagcagggggatcagagctgtgccaataagctgctgcgctggctgcagaactgg
tacaaaaaccacagcgctactgcctccaagccaccaccagcacggtttggtaagtttgga
ggagggaaagacgacggctctggatataaagccgctctgctctctggacctccgggggtg
gggaagaccaccactgctgccctggtctgcgaggagctgggcttcagctacgtggagatg
aacgccagctgtactcgcagcaaaaacagcctgaaggaagtcgtcgcagagtcgctcaac
aacaccagcatcgagaacttctacaaaggcacgtctcagacggtgagcagtaaacacgtc
ctgatcatggatgaggtcgatggcatggctggcaacgaggacagaggaggaatccaggag
atgatcggcctgatcagaagttcaaagattcccatcatctgcatgtgcaacgatcgcaac
cacccaaagatcaggtcactggccaactactgtttcgatctgcgcttccagaggccacga
gtggaacagatcaagggagccatgatgtccattgctttcaaggaaggaatcaagatccca
cctccagctcttaatgaaattatcctcgcttccaatcaggatgtccgacaggtgatccac
aacctgagcatgtggtcggctaaaaacaaggtgatgtcgtacgaccagtgcaagtctgac
gcagccagcgctcgcaaggacatgaaactggggccgtttgacgtctgcaggaaggtgttt
gctttgggggaggaggcggcccacatgagcctcatcgacaagtccgacctgttctttcac
gactactcgctggcaccgctctttgtccaagagaactacccgcatgtccgtccagctgct
gccaatggagacctgaagtcccacctggtgctgctcagcaaaacagcagactccatctct
gatggagacctggtggacagacggatccgctctgggcagaactggtcactgctgcctacc
caggccatctacgccagcgtgttaccaggcgagctcatgagaggctacatgagtcagttt
cccacattccccagctggctcggcaagaactcctcaaccaacaaacattcccgtatcgtt
caggagctggcctcacacatgagtttaaagacgttgagcagcagacaggcagtgaacctg
gactacctgcactacctgcggcaggcggtgctgagtcctcttcagaggcacggagccgag
ggtgccggcgaagctgtgcagctgctggacgactatcagctcatcaaggaggacgtggac
agcatcatggagatcagcgtctggggcggacagcccgacccctactccaaactggactct
aaggtgaaggcagctttcacacgagcgtacaacaaagaagttcacctgacgccgtactcc
ctgcaagctgtgaagaagggccgccgtggtggaggtggcggggagtcggagctgggtggg
gaggacgtggacaacgaagttcagtctgaggacgaaggggacggtctgaaagctgatgct
atgatcaaacagaagaaggccaagcagccaaagaaggagaagacagaagattctgggaag
ggcaaaggcaaggggaaaggcaaagctaagaaatga
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integrated database retrieval system
