Lates calcarifer (barramundi perch): 108896705
Help
Entry
108896705 CDS
T04895
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
108896705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108896705
Membrane trafficking [BR:
lcf04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
108896705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
108896705
NCBI-ProteinID:
XP_018551456
UniProt:
A0AAJ7QBB2
LinkDB
All DBs
Position
LG4:complement(24216558..24246652)
Genome browser
AA seq
1588 aa
AA seq
DB search
MKTNKSYKLVLHKKGFGGSDDELVVNPKVFPQVSLGDIIEIAHPTDEYSPLLLQVKSLKE
DLQKETISVDQTVAQAFKLRAYQDVIVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKS
LVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCE
MWDFDIYGDLYFEKAVNGFLSDLFAKWREKNCSHEVTVVLFSRTFYNAKTIDEFPEILRG
SIRQDHEGRFYEDFYRVVAQNERRDEWTSLLVTIKKLFIQYPVLVRLKEADGFPVGYNST
AAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDN
GIGVDLVCMGEQPLHAVPLFKLHNRTTPGDSRVGDDYNLPHWINHSFYTSKSLNSCSSFT
PRIKLAGHKIHAEKFKSSKDYTLCAPKDSDNTLPIQVDYDAYDAQVFRLPGPSRIQRSTN
FRMGRDKEISGRKSWGSVDVSAGIGASPPVRSGGPEEQRSLASDDSLGPVSNMLLIPRMP
SAQYEVSSSLGYTSTRELLEKMMDSQRDSSAPGRFTVGSAESTLHIRPGGYTPQRALINP
FTPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSQQRDPAHTSAELLE
LAYHEATGRRTTSRQAGENGLYIGGGMDEFTGSPGSNNSGTLTNHGSSFEDLSLTSADPT
LLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPDRQTLQNDYTEGCYDLLPHSDLE
RREDEGPVMSASQVFEEFICQRLMQGYQIIVQPNNRKPQPTVATPLGSSPLYSRGLVSLR
RAEEEETVYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYSYSLCPPHSDAQFVS
CWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVADGEGH
WDVYGEGAGAGVGGSGDWVLLDGFIRFLEGLNRIRRRHRSDRIIRQKGTPLKGLQVTSPL
PPYPSEPVPPPQGKKGTSALSALLEMEQNQKTLEEQQQQTKSSATFSDPTSVATASAYVD
SPRKDAAFILDFIRSPRSSYIYHSQLPAEANEAADKGMQPGVTAGAAAQPAGDTTVNSST
DTSGQSVVGALSLSSSSTLLEILEAIKHPTTGVQLLPEQKGLPLNCFISAEVVHWLVNNV
EGVATQGMAVDIMQKMLDEGLVAHASGDAMRTFIYGFYFYRIVGEKDGPTSQLPPTAAGG
WSAAALEDFALFQRKWFEVAFVLEERRPCDLPAFLLPWLPSRPASYASRHSSFSRSFGGR
SQAAALLAATVPEQKTVTLDVDVNNRSDRTEWCSCYYHGNFSLNAAFEIKLHWMAVTAAV
LFEMVQGWHRKAASCGFLLVPVLEVPFALTSYLYGDPLRAQLFIPLNIQCLLKNSSDNLF
EGFEPETYWDRMQLFQEAILYRFGFVHDKFSASAFNFPSENKPQYIHVTGTVFLQLPYSK
RKYSSGQQRRRRNSTTSNSHGPFGGEERVGYYWAYNTMLTKAWRTGVLGDEKLADRLLRD
FTDFCTNKDNRLLNFWDSCQEKMNASAP
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccaataagtcatacaagcttgtgttacacaagaaaggttttggtggaagtgat
gatgaattggttgtcaacccaaaagttttccctcaagtcagtttaggggatataattgag
atcgcacaccccacagatgaatacagtcctctcctgctgcaggtgaagagtctgaaagag
gacctgcagaaagagacaatcagtgtggaccagactgtagcacaagccttcaaacttcgt
gcatatcaggatgtcattgttaacatagtcgaccctaaggatgtaacactggacttggtg
gagctgactttcaaggaccagtacatcggcagaggagacatgtggagactaaagaagagt
ctggtgagcacatgtgcttatgtgacgcagaaagtggaatttgcaggaatcagagcccag
gccagtgaactctgggtgaagggagagaaagtgacctgtggttacatcagtgaagacacc
agggtggtgttcaggtccacatctgcgatggtatacatctttatccagatgagctgtgag
atgtgggacttcgacatctatggggatctctactttgagaaggctgtaaatgggttcctg
tctgacctttttgctaagtggagggagaagaactgcagtcatgaggtgacagttgtactt
ttctcacgtacattctacaatgctaaaactattgatgaatttcctgagattctaagaggc
tcaatcagacaggatcacgagggacgtttttacgaagacttctacagggtcgtggctcag
aacgagagacgagatgaatggacgtcattactggtcacaataaagaagcttttcatccag
tatcctgtcctggtgcgactgaaagaagcagatggttttcctgtgggttataactcaact
gctgctcaaggaaactacctggaggccattaacctttctttcaacgtatttgacaagcac
tacatcaaccgtaactttgaccgcactggacagatgtcagtggttattacacccggtgta
ggagtgtttgaagtggaccgactgcttatgattctcaccaaacagcgaatgatcgacaat
ggtattggggtagacttggtgtgcatgggagagcagccattgcacgcagtaccattgttc
aagctgcacaacaggacgacccctggagactctcgtgtgggagacgactataacctgcct
cactggattaaccacagcttctacacttccaaaagtctgaactcttgtagctcctttacc
cctcgaatcaaactggctggtcataagattcatgctgaaaaattcaagagcagcaaagac
tacactctctgtgctccaaaggactctgacaacaccttgcccatacaggtggactatgat
gcctatgatgcccaggtgttcagacttcctggtccttcccgaattcagaggagcaccaac
ttcaggatgggtcgagacaaagagataagtgggaggaagagctggggctcggtggatgtc
agtgcaggcataggggcgtcccctcctgtacgctctggtggtcctgaggaacagcgtagc
ctggcctctgatgatagtctgggtccagtgtccaacatgctgctcataccccgcatgcct
tctgcccaatatgaagtcagcagttctttgggatacacaagcaccagagagttgttggag
aagatgatggactctcagcgggactccagtgccccgggcaggttcacagtgggaagtgct
gagtcgacgctgcacatccgtccaggaggttacaccccacagagagctctgataaacccc
ttcaccccttctaggatgcctatgaagctcacctccaaccgccgccgctggatgcacact
ttcccagtcggtccttctggagaagcaatccagattcatcaccagaccagacaaaacatg
gctgaactgcagggcagccagcagagagatcctgctcacacctctgctgagctactggag
ctggcttatcatgaggccactggaaggcgaacaacctctaggcaagcaggagagaatggc
ctttacattggtggagggatggatgagttcactggaagtccagggagcaataacagtgga
actctgactaaccatggctcctcatttgaagacttatccctcaccagtgctgatccaacc
ctgctgctgtctgcacccccgacagtgcccagcttctgctgcacagtgggggtggactgg
aagtctctgaccacaccggcctgcctgcccctcaccaccgactacttccctgaccgccag
acgctgcagaatgactacaccgaaggctgctatgacctgctgccgcacagtgacctggag
aggcgtgaagatgaaggtccagtgatgagtgcgtctcaagtttttgaggagtttatctgt
cagaggttgatgcagggctaccagatcatcgtccaaccaaataacaggaaaccacagcct
actgtagccacaccacttggtagtagccctctttactccagaggtctggtctccctccgt
cgggcagaggaggaggagaccgtttactggctcagtatgggccggaccttccataaagtt
tgtctcaaagacaaaataatcactgtcactcgctacctgccaaagtacccgtacgagtca
gctcagatccagtacagttacagcctgtgtcctccacactctgatgctcagtttgtatcc
tgctgggtagagtttggccatgagagactggaggaatacaagtggaactacctggaccag
tacatctgctctgctggctctgaggacttcagtttgattgactctttgaagttctggagg
actcgcttcctcttgctgccagctggaggggctcggcgggtggcagatggagaggggcac
tgggatgtttatggagagggagcaggtgctggggtgggtggcagtggggactgggtgctg
ctggatggcttcatccgcttcctggagggtctcaaccgcattcggcgacgccatcgctcc
gacaggatcatcagacagaagggcacgccactgaaaggactgcaggttaccagtcctctc
cctccatatccttccgagcctgtgccgcctccacaaggcaaaaaaggcacttcagcttta
tcagctctgctggagatggagcagaaccagaagacactggaggagcagcagcagcagaca
aagtcctcagccaccttcagtgaccccacaagtgttgccacagcctccgcatatgtggac
agtcctcgcaaggacgctgcctttattttggattttattcgtagcccacgctcctcctac
atctatcactctcagttgcctgctgaagccaatgaggctgcggataagggaatgcagcct
ggagtgacagctggagcagcagcacagcctgcaggagacactacagtcaacagcagcaca
gacaccagtggccagtctgtagtgggagccctctctctgtcctcttcctcaacactgttg
gagatcctggaagccatcaaacatcccacgacaggtgttcagctgctcccagagcagaag
ggtctgccactcaactgcttcatcagtgcggaggtcgttcattggctggtgaacaatgtg
gagggtgtggctacacaggggatggctgtggatattatgcagaaaatgctagatgaaggt
ttggtggcccatgcttctggagacgcgatgcgcaccttcatctacggcttttacttctac
aggatagtcggagaaaaggatggcccgacctcccagctccctcccacagcagctggaggc
tggtctgctgcagccctggaggactttgccctgttccagaggaagtggtttgaagtggct
tttgtgttagaggaacggcgaccctgcgatctcccggccttcctcctgccctggctcccc
agccggccggcctcctacgcaagtaggcacagctccttcagccgcagctttggaggacgc
agccaggccgccgcactgctagctgctaccgtcccagagcagaagacagtcactttggat
gtggacgttaacaaccgcagcgaccggactgaatggtgcagctgttattaccacggaaac
ttctccctcaacgctgcctttgagatcaagctgcactggatggctgtgaccgctgcagta
ctctttgagatggttcagggctggcacagaaaagcagcctcctgcggcttcctgttggtt
cctgtactggaggttcctttcgctctgacgtcttacctgtatggagacccgctgagagcc
cagctcttcatccctctcaacatccagtgtctgctgaagaacagcagcgacaacctgttt
gaaggatttgaaccagagacatactgggacaggatgcagctctttcaggaggccatactg
tacaggttcggctttgtgcatgacaagttttctgcttctgcttttaatttcccctctgag
aataaaccccagtacattcacgtaacaggcactgtgttcctgcagctgccctactcaaag
aggaagtactccagtgggcagcagcgccgacgcagaaactccaccacctccaacagccac
gggccattcggcggcgaggagcgggtcggttactactgggcctacaacaccatgttgacc
aaagcctggaggacgggcgtgctgggtgacgagaagctggccgaccgcctgctcagagac
ttcaccgacttctgcaccaacaaggacaacagactgctcaacttctgggacagctgccag
gagaaaatgaacgccagcgctccctga
DBGET
integrated database retrieval system
