Lates calcarifer (barramundi perch): 108896735
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Entry
108896735 CDS
T04895
Symbol
tprb
Name
(RefSeq) LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein
KO
K09291
nucleoprotein TPR
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108896735 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108896735 (tprb)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108896735 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
108896735
NCBI-ProteinID:
XP_018551485
UniProt:
A0AAJ7QB03
LinkDB
All DBs
Position
LG17:complement(19922699..19945223)
Genome browser
AA seq
2374 aa
AA seq
DB search
MAALLLQEFEASELSKLPKTVQNKLERILSDQQYEIDSLKAQQEQFRVDSEQHFFEKVKQ
LAQCQEEFISQTQEHLKLKDEFTKLEDELKTVRDKNREYESAQERLSSEQTVLSKAKEEL
ETEKRDLVRTLERRSLEVEHLNDDLRQLNDKLVEVNTSKMALQMKLDELEAAEVNIKYKE
KRMEQEKELLHGQTSWLNEELKAKSEELLSLSRQKGNEILELKCTLENKEDELNRLQDQV
ASLKTSNENLQKQNEDMISKLKDAKEQQANMEEKFRNELNANIKLSNLYKGAAADSEAKS
EELSRAVEELHKLLKDAGEANKALEEKVQEMNGATDKAVAELKERIQGLEKELDNANELL
SSSKLRGPVAVTSVLTEEQMTTMSPTAAAVSKIKPGMKLTELYTAYVESQEQLQLERLEN
KRVNKYLDDIVQEVEAKAPILKRQRDEHERMQKSVASLSAKLEQAVKEVHRLQRESDEAN
KRSSVLERDSQRYELQLADMAQQVRVLLIELEEARGNHVMHEEEVSSADVSSTSEVISQH
LVTFRSVEELQKQNQRLLVALRELSDAQEKEEFEATGNKHGELEQSLEKAQAELESLKEQ
RSQQLKMTESIVRQRDMYRVLLAQATGVSFPQQGTPPEEFSLTSTPRRSPAATPTTGTPT
ALVSMATESAEALEAKAALRQLQEVFSTYKKERVESDKALTEQNEKLQEQLSDLRSQNAK
ISTQLEFASKRYEMLQDNVEGYRKEIASLREKEQKMAAATQKHEQTIHTLNEDLRAAKEK
LAMAEGRAESLRKERDMLKLVESRLTQEKETVQSQQQSQTLLLTNLQTIQATLERSETDT
RQRLNSQLEKQEREISQLQKRLENEVEQRHLLSRNQEIQLMDAKRQLETQVALHQKTKEL
LNAAELELNTLRVQQGSSEARHILTSPSTPIIRGLQGSDQDREDLQGRLRLAETQAEELA
ESLRAATSNMEQYRAMAQSLEESLDKEKQVTEQARSSIEAHMKEAENQHRKLEEKLLEAE
KENQGLEEQKRKALASLEEQINSLRRSLSSAQADHQAALQRVAVAEAQQQQAVQDSQEQA
KLAAEAQDKYEREMMLHAADVEALQAAKAQAQQAVELRHQLEEKVQRVSTELLEARISWE
EQEKILKEEMSKMENRHDEFQRQNALLHEQIQTMSSKMADSLQRAASESTMNISLTEEGK
SQDQVLEILRFVRREKEIAESRFEVAQGESLRYRLRVEHLERELKEVQDSLSAARERMQV
TAKTLAQHDELMKKTETMSILMETNKMLREERDKMEQELQQTQAKVQKLESDIMPLQQAN
SELSEKSGMLQAEKKILEEEIKRWKARTQHLVSQQKDSDPEEYKRLHSEKEAHLKRIQQL
TEESARLKTELTRSSNQTTSLQSQIQNLRDSMNKITEERNTLKTELDTKNHELQEKVRTI
TQVKKIGRRYKTQYDELKVEHDKMVAEAAAGPSQEEEARQASVQELQSLKDSLSQAETKT
KELEGQLENINKVVTERETEVRNAQEQSSRLQTELTRLRQELQDKVSQEETLRQQMTDKE
EKTRKAIVYAKQKINQLMATKDQLQKENDELKQQREELEVRVSALKSQYEGRLSRQEREL
RDLRGQQERQEQRDEPAEAGPSKTQEQQRSTEQRQISLKTTPAADRGSASTSEPPTANIK
PTPVVATASKQPVNPGNKPTPRASIRPMITPATVPTPTPTATVMPTTQVETQEAMQSTEG
PQVEHVTVYGSASGSVRSASPNVQTTLASPMLTVQQTQTQTQATAFVQPTQQQSVTHTEP
ASQEPPPVVIEATPSSQVEWPSTSSTSSVFGTVSATPGTSAMSKRPREEEESTTMVTDTE
ITQEDTSRAPIPKKLRIIQRVGPEEEVLPEDSAEAEGVVPTDSQDGAEASQTEEFPALEE
GEDSAASQSMTMDQEVTLTQSDTTDQMSQEVIVIITDTESDEEQEEEDEEEEEQDYEEEE
EEEDEEEEEEEEEDEEEDEGGMGEEGEESNEGSGDGNEAYEEDDTEGADVTDPGTETEES
LGASDSTQRPADSQTPSFEGSTIEAFSTEQPITSSGTRMPQSPRRPTQQLPPRLNIHPAP
TSDLGPPAQVQRIPVRRQSVGRVPQLTSGVPVSAQHFFDEDDRMVPSTPTLVVPHRDGFD
QAIHSPQVAGVPRFRFGPSEDMPQTSSSSHSDLGQLASQGGLGMYESPLFLATHEEESGG
RSVPTTPLQVAAPVTAFSEVAQSDTTEHASQSVPMVSTSTPGLVVPGAVGTGEERDDVFL
EPDTDRPSAEVSVDPVVSQGDVEEPSQPSDKASLPSTSQEPSSSSADTSSAPPKSSRPGP
SRQLQRWPESRGGRMKRGGQAFPSRGVHGRRFAR
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactcctgctgcaggagtttgaagcctccgaattatcgaagctaccaaaaaca
gttcaaaacaaactcgagaggattctttccgaccagcagtatgaaatcgattctttgaaa
gcacagcaagaacaatttcgagttgacagcgagcaacatttctttgagaaagtgaaacaa
cttgcccagtgtcaggaggaatttatctcccagactcaagaacatcttaaactcaaagat
gagtttaccaagcttgaggatgaacttaaaactgtgcgtgacaagaacagggaatatgag
tctgcccaggagaggctgtcatcagagcagacggtgctgtcaaaagccaaagaagaactg
gagacagaaaaacgagatcttgtgcgaacactggagaggagatccttggaagtggagcat
ttaaatgatgacttgaggcaactcaatgataagttggtggaggtcaacacctctaagatg
gctctccagatgaagctagatgagcttgaagcagctgaagtcaacattaaatacaaggag
aagcgtatggaacaagagaaggagcttctgcatggccagacatcttggctgaatgaggag
ttgaaggccaagagtgaggagctgctgtctctctcccgacagaagggtaacgagatcctg
gagttgaaatgcaccctggagaataaagaagatgagttgaaccgactccaagaccaagtg
gccagtttgaagacttcaaatgagaaccttcagaaacagaatgaggacatgatcagcaaa
ctgaaagatgccaaggaacaacaagccaacatggaggaaaagttcaggaatgagctgaat
gccaacattaagctttccaatttatataagggagcagcagcagattcagaggcaaaaagt
gaagagctgagccgagctgtggaggagctacataaactgctaaaggatgccggagaagcc
aacaaggccctggaggagaaggtacaggagatgaatggtgctacagacaaggctgttgct
gaactaaaggagaggatccagggtctagagaaagagctggacaacgctaatgagttgctg
tcaagttctaaacttagaggccctgttgctgtaacatctgtgctgacagaggaacaaatg
acaacaatgtctcccacagcagctgctgtatccaagatcaaacctggcatgaagctgact
gagttgtatactgcctatgtggagagccaggagcagctgcagttggagcgcttggagaac
aagcgagtcaacaagtacctagatgacattgtgcaggaagtggaagcaaaagcccccatc
ctcaaacgacaaagggatgagcatgagcgcatgcagaaatccgtggccagtctttctgcc
aagctggagcaggctgttaaggaggtgcaccgtctgcagagggagtctgatgaagccaac
aagcgctcctctgtcttggaaagggacagccagaggtatgaactgcagctggcagacatg
gctcagcaggtgcgtgtgctgctgattgagctggaagaggctcgtggaaaccatgtgatg
cacgaggaggaggtgagctcagctgatgtcagcagcacatcagaggtcatcagccagcat
ttggtgactttccgcagtgtggaagagcttcagaagcagaaccaacgtcttctggtggcc
ctcagggagctcagtgatgcccaggagaaagaggagtttgaggccactggaaacaagcat
ggtgagctggagcagagtttggagaaagctcaggctgagctggagtccctgaaggagcaa
cgcagccaacagttaaaaatgactgagtccatcgtgaggcagagggacatgtaccgggtg
ctgctggctcaggcaactggagttagcttccctcagcaaggtacgcctcctgaggagttc
tccctgacttccacccctcgacgctcacctgctgccacccctaccacagggacacctact
gctcttgtctccatggcaacagagtctgcggaagcactggaggccaaggcagctttgcga
cagttgcaggaagtcttctccacctataaaaaggagcgtgtggagagtgacaaggcactg
acggagcagaacgagaagctccaggagcagctctctgacctccgctcccagaatgccaaa
atatccacccagctagagtttgcctcaaagaggtatgagatgctgcaggacaacgtggag
ggctacaggaaagagattgcctccttaagagagaaagaacagaagatggctgctgccaca
cagaagcacgagcagaccatccacactttgaatgaggatctgagagctgccaaagagaaa
cttgctatggcagagggccgtgctgagagcctgcgtaaggagagagacatgctgaagctg
gtggagtccagactgactcaggagaaagaaacagtccagagccaacagcagagccagacc
ctgctgctgaccaacctccagactattcaggcaactcttgagcgttcagagactgataca
cgtcagcgtctcaacagccagttggagaagcaggaacgggagatttcccagctgcagaag
aggctggagaatgaggtggaacaacgccacctgctcagcagaaaccaagaaatccagttg
atggatgcaaagaggcaactggagacacaggtggctttacaccaaaagaccaaagagctg
cttaatgctgcagagttggagctcaacaccctcagggtgcagcaaggcagcagcgaagcc
cgtcatattttgacttccccctccacacctatcatcagaggcctgcagggttcagatcaa
gatagagaggacctgcagggccgcctgaggttagctgaaacccaggcagaggagctggcc
gagagcctcagggcagccacctccaacatggagcagtacagagccatggctcagagcctg
gaagagtccctggacaaagagaagcaggtaacagagcaggcacgctcatccattgaagct
catatgaaggaggctgagaaccagcaccgtaaattggaggagaagcttctggaagcagag
aaagagaaccaaggcttagaggagcagaagaggaaagctttagcctcacttgaggagcag
attaacagtctaaggagaagtttgagcagtgcccaggcagatcaccaggcagcgctacag
cgagtggcagtggctgaagcccagcagcagcaggctgtacaagacagtcaggagcaggct
aagctggcagcagaagcacaagataagtatgagcgggagatgatgttgcatgcagcagac
gtggaggccctgcaggctgccaaggctcaggcccagcaggccgtcgagctcagacatcag
cttgaagagaaagtccagagggtcagcactgagctactggaggccaggatctcctgggag
gagcaggaaaagatccttaaggaggagatgtcaaagatggagaatcgccatgacgagttc
cagaggcagaacgccctcctgcatgagcagatccagacaatgagcagcaagatggctgac
agtttgcagcgtgctgccagtgagagtaccatgaacatctccctgactgaggagggcaaa
tctcaagaccaggtccttgagattctcaggtttgtgcgtcgggagaaggagattgcagaa
tctcgttttgaggttgcccaaggtgagagtttgcgttatcgtctgagggtggagcatctg
gaacgagagctgaaggaagtgcaggacagcttgagtgccgcaagggagaggatgcaggtg
acagcaaagaccctagctcagcatgatgagctgatgaagaagacagaaacaatgagtatc
ctgatggagaccaacaagatgctgagagaggagagggacaagatggagcaggaactgcaa
caaacccaagcaaaggtgcaaaagctggagtcagacatcatgccactgcagcaggccaac
tccgagttgagtgagaagagtggcatgctgcaggcggagaagaagatactggaagaggag
atcaagcgctggaaggctcggacacagcatttggtgagtcaacagaaagattcagatcca
gaggagtacaagcgtctgcactctgagaaggaggcacatctcaaacgcatccagcagctc
actgaggagagtgccagacttaaaacagaactgacgaggagcagtaaccaaacaacatcc
ctgcaaagccagatacagaacttgcgtgacagcatgaataagataactgaggagagaaat
acactgaagacagaattggataccaagaaccatgaacttcaggagaaggtgcgaacaatc
acccaggtcaaaaagattggacgccgctacaagactcagtatgatgaacttaaggtggaa
catgacaagatggtagctgaggcagcagcaggtccttcccaagaggaggaggctcgccag
gcttcagttcaggaacttcagagcctcaaagattctctgagccaggctgaaaccaagacc
aaagagctggaaggacagctggagaacataaacaaggtggtcacagagcgtgagactgag
gtgcgtaacgcccaggaacagtcttccaggctgcagacagagctgactagactgaggcag
gagttgcaggataaggtttctcaggaggaaacactgaggcagcagatgactgacaaggag
gagaagaccagaaaggccattgtttatgccaaacagaagatcaaccagctcatggccacc
aaagaccagctgcagaaggaaaatgatgagctaaagcagcagcgtgaggagctggaggtc
cgagtgagcgctctcaagtctcaatacgaaggccgcctgagtcggcaggagagagaactg
agagacctgcgaggtcaacaggagagacaggagcaaagagatgagccagcagaggcaggt
cctagcaagacccaggagcagcagaggagcacagaacagagacagatcagtctgaagaca
actccagctgcagacaggggcagtgccagcacctctgaacctccaactgccaacattaag
ccaacgcctgtagtcgctacagccagcaagcagcctgtcaacccagggaacaaacccact
ccaagagcaagcatcaggcccatgatcaccccagctactgtacccacaccaacacccaca
gctacagtcatgcccaccacacaggtggaaacccaggaagccatgcagtccactgaaggc
ccacaggtggaacatgtgacagtgtacggcagtgccagtggttctgtacgctccgccagc
cccaatgtccagaccactttagctagccccatgctgactgttcagcagacccagacccag
acccaggctacagcatttgttcagccaacgcagcaacagagcgtgacccatacagagcca
gccagtcaggagcctccgcctgtggttattgaggcaacacctagttcccaggtggaatgg
ccttcgacctcctccacctcctctgtgtttggcactgtttcagcaacaccaggaacctct
gcaatgtccaagaggcctcgcgaggaggaggaaagcaccaccatggtcactgacacagag
attacccaggaggacacctccagggctcctatacccaagaagctgcgtatcatccagaga
gtgggtccagaggaggaggtgctgcctgaggacagtgctgaggctgagggggtggtgcca
acagacagtcaagatggtgcagaagcaagtcagacagaggagtttccagcactggaggaa
ggagaggacagtgcagcttcccagtccatgacaatggaccaagaggtgaccttgacccaa
agtgacaccactgaccagatgtcacaggaagtaatcgtcataataacagacacagaaagt
gacgaggagcaggaagaggaggacgaggaggaagaggagcaggactatgaggaggaggaa
gaagaggaagatgaagaagaggaggaggaagaagaagaggatgaggaggaagacgaggga
gggatgggagaggaaggagaggaaagcaacgaggggagcggagatggcaacgaggcttat
gaagaagacgacacagagggagctgatgtaacagacccgggcacagagacagaggagagt
ttgggggcgtctgactccacccagagaccagcggattcccagacacccagcttcgagggc
agtacgatagaggccttctctacagagcagcccatcacaagctctggtacgcgcatgccc
cagtcgccacgaagaccaacacaacagctgcccccccgcctgaacatccacccggcccca
acatcagacctaggaccaccagctcaggttcagcgtatccctgttcgacgccagtcagtg
gggagagtccctcagctcacctctggagtgccggttagcgctcaacacttcttcgatgag
gatgacaggatggttcccagcactcccactctggtggtaccacaccgcgatggttttgac
caggccatccattctccccaggtagctggtgtacctcgcttccgttttggcccttcagag
gacatgccccagaccagctcctcctcacactctgaccttggacaacttgcatcgcaagga
ggtcttgggatgtatgaaagtcccttgttcctagcaactcatgaagaagagtctggtgga
cgcagtgttcccactacaccattacaagttgcagcgccagtaacagccttctcagaggtg
gctcagtctgacaccaccgagcacgcctcccagtctgttcccatggtgagcacgtccaca
ccaggtctggtggtgccaggagcagttggcacaggggaggagagagacgatgtcttcctg
gagcctgacactgataggcccagtgctgaggtgtcagtggatcctgtggtgtctcaggga
gatgtggaggaaccaagtcagccctctgacaaggccagcctcccctccaccagccaggag
ccctcttccagttctgcagatacaagcagcgctccacctaaatcctctagaccaggtccc
agccgacagctgcagcgctggccagagagccgcggagggcgtatgaagagaggaggtcag
gcatttccctctcggggtgtacacggcagacggtttgccagatga
DBGET
integrated database retrieval system
