Lates calcarifer (barramundi perch): 108896823
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Entry
108896823 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108896823
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
108896823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
108896823
NCBI-ProteinID:
XP_018551588
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All DBs
Position
LG7_1:complement(14317708..14333673)
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AA seq
1395 aa
AA seq
DB search
MALSMETQLQSIFEDVVKTEMIEEAFAGMFMDTPEDERTKLISCLGAFRQYWGTLPQESH
EQCVQWIVRFIHSQHSPKRISFLYDCLAMAVETSLLPPRMVCVALISSESLEWERTQLWA
LTFRLIRKIIGGVDYKGVRDLLKAVLDKIQTVPTTVSSAIVQQLLAAREVVEYILDRNAC
LLPAYFAITEIRKLYPEGQLSHWLLGSLISDFVDSFRPTARINSICGRCSLLPVVNNSGA
ICNSWKLDPTTLRFPLRGMLPFDKDLFEPQTGLLRYVLEQPYSREMVCNMLGLNKQHKQR
CPVLEEQLVDLVVYAMERSETEEHFDADIGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL
SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALGDFLPVMKLFDLLYPEKECIPVPDI
NKPQSTHSFAMTCIWIHLNRKAQNDNSKLQIPIPHSLKLHHEFLQQSLRNKTLGMSDYKI
ALLCNAYSTNSECFTLPMGVLVETIYGNGSMRINLPGTNCMASGSVTPLPMNLLDSLTVH
AKMSLIHSIATRVIKLAHAKSSIALAPALVETYSRLLVYMEIESLGIKGFISQLLPNVFK
SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQNQLHLCVESTALRLIT
ALGSSEVQPQFTRFLNDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIHGTWCKD
ILQTIMNFTPHNWASHTLSCFPAPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMANEN
DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGFRVLERIGARALVAHVRTFADFLVYEF
STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN
DFRNRVNDFVKENAPEHWLQSDWHNKHMSYHKKYPEKLYFEGLADQVNPPMQLQPQYLPI
YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYER
HLRDRTNLKRKLVHAIMSSLKDNRTPGWCLSETYLKFGMNPREDNVWIPDDTYYCKLIGR
LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQ
PLVPRENITAWMNAIGLVITALPEPYWIVLHDRIVSVIGSPALTSETEWAGYPFALLDFT
ACHQSYSEMNCSYVLALAHAVWHHSSIGQLSLIPKFLSETLKPIVQTEFQLLYVYHLVGP
FLQRFQQERTRCMLEIGVAFYEMLQAVDQHCQHLSYMDPICDFLYHIKYMYTGDSVKEQV
EKIIMTLRPAMKLRLRFITHSSKIETSSSSSAAATATTTSTSSSSTTAPQPPPPSLSSSS
AAASPSSTQHTHPPM
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttcgatggagacgcagctccagagcatctttgaagatgttgtgaaaactgag
atgatagaggaggcctttgctgggatgtttatggacactccagaggatgagcggactaag
ctcatcagttgtcttggagccttcaggcagtactggggaacactaccacaagagtctcat
gaacagtgtgttcagtggatagtgcggtttatacacagccagcacagtcccaaaagaatc
tccttcctctatgactgccttgcaatggctgtggagaccagcctgctaccacctaggatg
gtgtgtgtagctctgataagctcagagagtttggagtgggagaggacacagctgtgggca
ttaactttcagactgatccgcaagatcattggaggggtggactacaagggagtccgggac
ctgctgaaagctgttctggataaaattcagaccgttcctaccactgtcagctcagctata
gtccagcagcttctagctgccagagaggtagtggagtatatcctggacagaaatgcctgc
ctcctgccagcctactttgccatcacagaaatcagaaaactttatccagaggggcagctg
tcacactggcttctaggcagtttgatatcagactttgtggacagtttcagacccacagca
agaatcaactctatctgtggacgatgcagcctgttaccagtagtgaataacagcggtgcc
atctgtaactcctggaaattagaccccactactcttcgcttccccctgagaggcatgctg
ccctttgacaaggacctgtttgagccacagacaggcttgctgcgctatgtgctagaacag
ccctactcaagagagatggtgtgcaacatgctaggactcaacaaacagcataagcagcgc
tgcccagtgctggaggagcagctggtggacctggtggtgtacgccatggagcgctccgag
accgaggagcactttgatgccgacataggaggaactagccagctgctgtggcagcacctc
tcctcccagctcatcttcttcgtgttgtttcagttcgcaagcttcccacacatggtgctg
tcgttacaccaaaagcttgcaggcagaggtcttattaaagggagagaccacctgatgtgg
gtcctgctacagttcatatcaggaagtattcagaagaacgccttaggtgacttcctgcct
gtcatgaagctctttgacctgctttacccagaaaaagagtgcatcccagttcctgacatt
aacaagcctcagtcgactcattcctttgcaatgacctgcatctggatccaccttaaccgc
aaagctcagaatgacaactctaaactgcagatacccataccacactctctgaaactacat
catgagtttctccaacagtcgctgcgtaacaagactctgggcatgtctgactataagatc
gccctgctgtgtaacgcctacagcacaaactccgagtgcttcactctgccaatgggcgtc
ctagtagagaccatctatggaaatggatctatgaggatcaaccttcctggcaccaactgt
atggcatcaggatctgtcaccccactgcccatgaatctgctggattcactcacagtacat
gcaaagatgagtctgatccacagcattgccacacgggtgataaagttggctcatgccaaa
tccagcatcgccctggcccctgcactggtagaaacatacagcagactgctggtctatatg
gagattgagtcactgggcatcaaaggattcatcagccaattgttgcccaacgtgtttaag
tctcatgcgtggggaatccttcacactttgctggagatgttcagctacaggatgcaccac
atccagccgcactacagagtccagctcctgagtcatctgcacagtctggctgccgtaccc
cagaccaaccagaatcagctgcatctgtgtgttgagagcacagctctgcgtctcatcaca
gcgttggggagttcggaggttcaaccccagttcacacgcttcctcaacgacccaaagacg
gttctgtcagccgagtctgaggaactgaaccgagccctgatcctcactttggccagagcc
acacacgtcactgattttttcacagggtctgactccatccatgggacttggtgtaaagac
attctccagaccataatgaacttcacgcctcataactgggcctcacacaccctgtcctgc
ttccctgctcctctacaggcgttcttcaagcagaacaacgttcctcaggagtctcgtttc
aacttgaagaagaacgtggaagaggagtacaggaagtggaaatccatggccaatgagaac
gacatcatcacccacttctccatgcagggctcacctccactcttcctctgtctgctgtgg
aagatgctactggagacggaccacattaaccagattggcttcagggttttggagcgtatc
ggggctcgtgcgctcgtggctcacgtgcgcacatttgcagacttccttgtctacgagttc
tcgacctcagctggcggacagcagctcaacaagtgcatcgaaatcctcaatgacatggtc
tggaaatacaacatagtcacactggacagactcattctatgtctggcgatgcgtagccat
gagggcaacgaggctcaggtttgctacttcataatccagctgctgctgctgaagccgaac
gacttcagaaatcgagtcaatgattttgtcaaggagaacgcccccgagcactggctgcag
agtgactggcacaacaaacacatgagctaccacaagaaatacccagagaagttgtacttt
gagggtcttgcggaccaggtcaaccctcccatgcagctccagcctcagtacctgccaatc
tactttggcaacgtgtgtctgcgcttcctgcctgtctttgacatcgtcatccaccgcttc
ctggaactccttcctgtctccaagtctctggaaacgctactggatcatctgggagggctg
tacaagttccacgaccgtccggtcacctacctgtacaacacacttcactactacgaacga
cacctgagagaccgaaccaacctgaagagaaaactggtgcacgccatcatgtcctcactg
aaggacaaccgtaccccaggttggtgcctcagtgagacctatctgaagtttggcatgaac
cccagagaggacaacgtgtggatccctgatgacacttactactgcaagctgattggacgc
ctggtggacacgatggcgggaaagtcacctggtcctttccccaattgtgactggaggttc
aatgagttccccaaccctgcagcccacgccctgcacgtcacctgtgtggagctgatggct
ttggcagtgccggggaaagatgtcggtaacgctctgctcaacgttgtgttgaagagccaa
cccctggttcccagagagaacatcacagcttggatgaatgccattggacttgtgatcact
gcacttcctgagccctactggatcgttctccacgaccgcatcgtgtctgtgatcggctcg
ccggccctgacatcagagacagagtgggcaggctatcccttcgccttgctggacttcaca
gcctgccaccagagctacagtgagatgaactgcagttatgtgctcgcattagcacacgcc
gtctggcatcactcatccatcggacagctgtctctgatccccaaattcctgtcagagact
ctgaagcccatcgtccagacagagttccagttactctacgtgtatcacctggtggggccg
ttcctgcagcgcttccagcaggagaggacacgatgcatgttggagattggtgtggccttc
tatgagatgctccaggcagtcgaccaacactgtcaacatctgagctacatggacccaata
tgtgacttcctctatcacattaaatacatgtacactggagacagtgtgaaggaacaggtg
gagaaaatcatcatgactttgcgtccagccatgaagctgcgcctgcgcttcatcacacac
agcagcaagatagagacatcatcatcatcatcggctgctgccactgccaccaccacttcc
acctcctcctcctccaccaccgcccctcagccccctcctccctcgctctcatcatcctct
gctgccgcctcgccctcctccacgcagcacacacacccgcccatgtag
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