Lates calcarifer (barramundi perch): 108896834
Help
Entry
108896834 CDS
T04895
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108896834
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108896834
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108896834
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108896834
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108896834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
108896834
NCBI-ProteinID:
XP_018551598
UniProt:
A0A4W6EIQ3
LinkDB
All DBs
Position
LG7_1:13582088..13589550
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAIKTGGAIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDFDKGQISYSKNGNDLGLAFDIPQNLRNQAFFASCVLKNAELKF
NFGGESFKHTPKSGFVALDQAPEGHAVKSSQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTFNNVKQFKKYVDNPKLRELLVIGGVAAKEQLSALEQGIDIVVGTPGRLDDLVSTGKLS
LSQIRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYAVRAIKEHKMDQAIVFCRTKIDCDNMEQYLIQQGGGPDSKGHQF
SCVCLHGDRKPNERKHNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRTLGGGNYKGHVDVLAPTVQDLASLER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttctctgaaatgggggttatgccagaaatcgcacaggctgtggaggagttg
gactggctgctacctactgacatccaggcagagtctattccccttattcttggtggagga
gatgtgctcatggcagcagaaactggtagcggtaaaacaggagccttcagtatccctgtg
atccagattgtgtacgagaccctgaaggatcagcaagagggcaagaagggcagagccgcc
atcaaaaccggaggagctattttcaacaactggcaaatgaatccttacgaccgcagccca
gccttcgcaattggtccagatggactgtgctgccagagcagggagttcaaagagtggcac
ggctgtcgctctacaaaaggtgttaccaaagggaagtactattacgaagtgacctgtcat
gatcaggggctatgtcgtgtgggctggtccaccagtcaggcagcactggacttgggaact
gataagtatggttttggatttggagggactggaaagaaatccaacaacaagcaatttgac
agctacggggaggagtttactatgcatgacactattggatgctacctggatttcgacaag
ggccagatttcctactccaaaaatggtaatgacctcggtttggcttttgacatccctcaa
aatctgaggaatcaggctttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagagagctttaaacacaccccaaagagtgggtttgttgccctggatcag
gcaccagagggtcatgcagtcaaatcttctcagacaggcagcgctaaagtcagtcaggtg
aaagcatcatccaatgcacccaaagccctgatcatcgagccgtctaaagaattagccgag
caaactttcaacaatgtcaaacaatttaagaaatatgtggataaccccaaactcagggaa
ctgctggtgattggtggtgtggctgccaaggagcagctgtctgctctggaacaggggatt
gacattgtggtgggaacgcccggcagactggacgacctcgtatccactgggaaactcagt
ctgtctcaaatccgctttctggtcctggatgagtgtgatggcctcctgtcagcaggctat
acagattttatcaacagaatccataaccaaattccacaggtcacctctgatggcaagaga
ctgcaggtgatagtttgctcagccacactgcactccttcgacgtgaagaagttgtctgag
cgaatcatgcactttcccacctgggtagacttgaagggggaagactcagtcccagagact
gtccaccatgtggtggtgcctgtcaatcctaagactgatcgtctctgggagcgcctgggc
aagaaccacatcaggactgatgaagtccatgcaaaagataacaccagaccaggagccaac
tctgctgaaatgtggtcagaagccatcaaggtgctgaagggcgagtacgcagtgagggcc
atcaaagagcacaagatggaccaggccatagtcttctgtcgcacaaagatcgactgtgac
aacatggaacagtacctcatccagcaaggaggaggtccagacagtaaaggccaccagttt
tcttgtgtttgtctccatggtgatcgcaagcccaatgagcggaaacataacttagagcgt
ttcaagaggaaagaggtgaggctcctgatctgcacagatgtagctgccagaggaattgac
atccacggagttccttatgtgattaatgtcaccctgccagatgagaagcagaactatgtc
catcgtattggcagagttggaagagccgagagaatggggctggccatctccttagttgct
atggaaaaagagaaggtgtggtaccatgtttgcgcaaaccgaggcagaggttgctacaac
acccggctgaaggaggatggaggttgcaccatctggtacaacgagaaagagctcctgtct
gaaattgaggagcatctcaagtgcaccatcacccagtgtgagccagacattaaagtgcct
gtggatgagtttgatggaaaggtcacctatggtcagcgcaggacactgggaggtggtaac
tacaagggacacgtggatgtgctagctccaacagtccaggatctggctagcctcgagaga
gaagcccaaacctccttcctccacctgggatacatgccaaaccagcttttcagagccttc
taa
DBGET
integrated database retrieval system
