Lates calcarifer (barramundi perch): 108896873
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Entry
108896873 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04140
Autophagy - animal
lcf04148
Efferocytosis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108896873
04148 Efferocytosis
108896873
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108896873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108896873
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108896873
Hops complex
108896873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
zf-RING_2
zf-RING_UBOX
DUF1664
zf-ANAPC11
Apolipoprotein
zf-rbx1
DUF5600
zf-C3H2C3
zf-RING_5
DUF4446
Motif
Other DBs
NCBI-GeneID:
108896873
NCBI-ProteinID:
XP_018551672
UniProt:
A0AAJ7QBG1
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All DBs
Position
LG7_1:14711485..14716619
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHSRLSSANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPEK
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSKVHRLFLDPTGSHVLISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETSTGPILVGTSQGIIFEAEISA
NEGSLFNTNPDQYFRQVHSLEEDGKPAPICCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFNQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTPDIDLNLKKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQTERTQITLLVTWLAELYLNRLGQLESDGNSIIFQETRDEFRHFLSTPKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDEKLFYK
FSPVLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELN
VTEEAIHNYLLSLYAKYKPDSLLLYLEQAGTHASEIHYDLKYALRLCAEHGYLRACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICGSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSAYKQGRLEE
LQKKLAATTNPPSHATARMPKDEGDTSSLGKGNAGTSREQIKSDIDDIIASECVYCGELM
IKSIDKPFIDPQKFDEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattcttgacgagtacgaggactcgcaaaacacgaggcaaagtgcgcagcag
cacagccgcctgtcaagtgccaacatcgggataacacattcaggctttgtgaatgtgaga
cttgaggaagagaaaccgatattcaacaagcaaaggatcgattttacaccgccggagaaa
ataaaccatcttgcagtctgcaacaatcagctctgcatgagtctgggaaaggacaccctg
ctgaggattgatttggccaaaccagatcagcccaatcagattgaattaggaaggaaagat
gacagtaaagttcacagactgttcctggaccccacaggctcccatgtgctgatcagcttg
agcactagtgagtgcctgtacctcaacaggaacacgcagaaggtgcgcagtctgtcccgc
tggagaggccacctcatcgagagcgtgggctggaacaagctgctgggcaatgagaccagc
acaggacccatcctggttggcaccagtcaaggcatcatctttgaggccgagatctctgca
aatgagggcagcctgttcaacactaatccagaccaatacttcagacaggtccactcccta
gaggaggatgggaagccagcacctatctgctgcttggaggtggagcgtggcctggagaac
aagtacttcatcattgccaccacccgcaaacgcctgttccagtttgtgggcaaggtagca
gaggggtcagagcagcaaggcttcagctccatcttcaaccagaaccaggacttgctgcct
agtttccaggagttcccagccaatatgggctacagtgagattactttctacacctcaaag
ctgcggacatcccctaaggcgttcgcctggatgatgggtaacggggttctttatggtcag
ctggactacgtcaggcctgattccctgttgagtgatgtacaggtatgggagtacaccccg
gacattgaccttaatctcaagaagcccatctcaattgtgctgacacagttccacttcctg
ctgttgctccatgaccgagttaaggccatctgcaccctgaatggacaggtggtatatgag
gatgtgtttccagataaatttggcacccttaaaaagatgattaaggacccagttggtggg
ttggtgtggatctacactgagagggcagtcttccggtatcacatccagcgtgaggccagg
gacgtctggcagatgtacatgagtatgaataaatttgatctggccaaggagtactgccgc
gaccgtcctgagtgcatggacatggtgctggccaaggaagctgagcactgctttcagaat
aaacgatacctagagagtgccaagtgctatgctctgacacagaactactttgaagagata
gcgctcaagttcatcgaggccaaacaagaggaagccctgaaggagtttttactgaagaaa
cttaataatttgaaacagactgagagaacgcagatcaccttgctggtcacctggctagca
gagctctacctgaaccgcctcggccagctggagagcgacggtaacagcatcatcttccag
gagacccgtgacgagttccgccacttcctcagcacccccaagcacaaggagtgcctgttc
aacaaccgcagtaccatctacgacctgctggccagccatggcaatgtggacgacatggtt
tacttctcagtcgtcatgcaggactacgagagagtcatatcccactattgccagcacgac
gactacagcgctgctctggacgtgctctccaagcactgtgatgaaaagctcttctataag
ttctcccctgtcctcatgcagcatattcccaaaaaagtggtagacgcgtggattcagatg
ggaaagaggctggacccaaagaagctcatcccagctctgatgaactacagccagatgggc
agcacccagcagatcagcgaaaccatccgctacatggagttttgcgtgtacgagctcaat
gtgacagaggaggcaatccataactacctgctgtcgctctacgccaagtataagccggac
tctctgctgttgtatctggaacaggcgggcacacatgcctcagagatacactatgacttg
aagtatgctctcaggttgtgtgctgaacatggctacctccgagcatgtgtcctggtttat
aggattatggaattgtatgaggaggcggttgaccttgctttacaagtagatgtagacttg
gccaagtcatgtgccgacctgcctgaggatgacgaggagctgaggaaaaagctttggctg
aagatcgcccggcatgtggtgcaagaggagaaagatgtgaagaaagccatgaactgcctg
tccagctgcaacctgctcaagattgaagacatcctgccattctttccggactttgttacc
attgaccactttaaggaggccatctgtggctccctggaggagtacaaccagcacattgag
gagctgaagcaggaaatggaggaggctacagaaagcgctaaacgcattagagaagacatt
caagaaatgaggaacaaatatggtgtagtagattcccaagaaaagtgtgctgcttgtgac
ttcccattgctcaacaggcccttctatctattcctgtgtggacacatgttccactatgac
tgcctgttccaggaagtgaccccccacctgtcggcatacaagcagggtcgtctggaggag
ctgcagaaaaagctagctgcaaccacgaatcctccaagtcacgccaccgcccgaatgccc
aaggacgaaggagacacttccagcctgggaaagggcaatgcaggcacaagccgggaacag
ataaaatcagacattgatgacatcattgcgtctgagtgcgtgtactgcggagaactgatg
atcaaatccatcgacaagcctttcattgatccacagaaatttgacgaggagaaatccagc
tggctatga
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