KEGG   Lates calcarifer (barramundi perch): 108896976
Entry
108896976         CDS       T04895                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03410  Base excision repair
lcf03420  Nucleotide excision repair
lcf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108896976
   03410 Base excision repair
    108896976
   03420 Nucleotide excision repair
    108896976
   03430 Mismatch repair
    108896976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108896976
   03036 Chromosome and associated proteins [BR:lcf03036]
    108896976
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108896976
DNA replication proteins [BR:lcf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108896976
  DNA Replication Termination Factors
   ELG1-RFC complex
    108896976
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108896976
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108896976
  Check point factors
   HRAD17(Rad24)-RFC complex
    108896976
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_11 AAA_30 Gp44_lid DUF815 Mg_chelatase SLFN-g3_helicase AAA_24 AAA_19 RuvB_N AAA_28 AAA_14 AAA_5 Cdc6_lid Kinesin ResIII AAA_7
Other DBs
NCBI-GeneID: 108896976
NCBI-ProteinID: XP_018551870
UniProt: A0A4W6FYF8
LinkDB
Position
LG17:1358273..1364961
AA seq 357 aa
MQAFLKGATVQTTRPQKDKTAGPSTEKKTKAVPWVEKYRPKCVDEVAFQDEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKNF
AQLTVAGTRPDGKPCPPFKIIVLDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRI
IEPLTSRCSKFRFKPLANQIQEERLLMICDKENLKYTKESIAALVKVSEGDLRKAITFLQ
SAARLNVDREITERAVIEIAGVVPPKMIDNLLQICFKGTFEKLEVAVRNMVDEGYAATQI
LSQLHESIIEQDLSDKEKSAITEKMAVVSKCLSDGADEYLQMLSLCSVIMQETSQNN
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcctttttgaagggagcgactgttcagactacgagacctcagaaagacaagaca
gcagggcccagcacagagaagaaaaccaaggctgttccttgggtagagaaatacaggcca
aagtgtgtcgatgaggtggcctttcaagacgaggtggtggcagtgcttaagaagtctctg
gagggagcagatcttcccaacttgcttttctatggccctcctggaacaggaaagacctcc
accatcttagctgctgccagagaactttatggtccagagctgtacagacagagggtcctg
gagctcaatgcctctgatgaacgaggcatccaggttgtcagagagaaggtcaagaacttt
gctcagctcaccgtggctgggacacgcccagatgggaagccatgtcctccttttaagatc
atcgtgcttgatgaggcagactccatgacggcaccagctcaggctgctctcagacggacc
atggagaaggaatcgcgcaccacccgcttctgtctcatctgtaactacatcagcaggatt
attgaacctctgacctccagatgttccaaatttcgcttcaaacctctagccaatcagatc
caagaagagcgcctgctgatgatctgtgacaaggagaacctcaagtacaccaaagagagt
atagcagcgctggtgaaggtgtctgaaggagatctgcggaaagccatcaccttcctccag
agcgctgcgcgcctcaacgtcgacagggagatcacagagcgtgctgtaatagaaatagca
ggggttgtgcctcccaagatgatagacaacttactccagatctgcttcaaaggaacattt
gagaaactagaggttgcagtcagaaacatggtggatgaaggctatgcagccacacagatc
ctgagtcagctccatgaatctatcatagagcaggacctgagtgataaggagaagtcggcc
atcacagagaagatggcggttgtgagtaagtgtctgtcagatggagcagatgagtacctg
cagatgttgagtctctgttcagtcatcatgcaggaaacatcccagaacaactaa

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