Lates calcarifer (barramundi perch): 108896976
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Entry
108896976 CDS
T04895
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03410
Base excision repair
lcf03420
Nucleotide excision repair
lcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108896976
03410 Base excision repair
108896976
03420 Nucleotide excision repair
108896976
03430 Mismatch repair
108896976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108896976
03036 Chromosome and associated proteins [BR:
lcf03036
]
108896976
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108896976
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108896976
DNA Replication Termination Factors
ELG1-RFC complex
108896976
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
108896976
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108896976
Check point factors
HRAD17(Rad24)-RFC complex
108896976
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
AAA_30
Gp44_lid
DUF815
Mg_chelatase
SLFN-g3_helicase
AAA_24
AAA_19
RuvB_N
AAA_28
AAA_14
AAA_5
Cdc6_lid
Kinesin
ResIII
AAA_7
Motif
Other DBs
NCBI-GeneID:
108896976
NCBI-ProteinID:
XP_018551870
UniProt:
A0A4W6FYF8
LinkDB
All DBs
Position
LG17:1358273..1364961
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGATVQTTRPQKDKTAGPSTEKKTKAVPWVEKYRPKCVDEVAFQDEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKNF
AQLTVAGTRPDGKPCPPFKIIVLDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRI
IEPLTSRCSKFRFKPLANQIQEERLLMICDKENLKYTKESIAALVKVSEGDLRKAITFLQ
SAARLNVDREITERAVIEIAGVVPPKMIDNLLQICFKGTFEKLEVAVRNMVDEGYAATQI
LSQLHESIIEQDLSDKEKSAITEKMAVVSKCLSDGADEYLQMLSLCSVIMQETSQNN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttttgaagggagcgactgttcagactacgagacctcagaaagacaagaca
gcagggcccagcacagagaagaaaaccaaggctgttccttgggtagagaaatacaggcca
aagtgtgtcgatgaggtggcctttcaagacgaggtggtggcagtgcttaagaagtctctg
gagggagcagatcttcccaacttgcttttctatggccctcctggaacaggaaagacctcc
accatcttagctgctgccagagaactttatggtccagagctgtacagacagagggtcctg
gagctcaatgcctctgatgaacgaggcatccaggttgtcagagagaaggtcaagaacttt
gctcagctcaccgtggctgggacacgcccagatgggaagccatgtcctccttttaagatc
atcgtgcttgatgaggcagactccatgacggcaccagctcaggctgctctcagacggacc
atggagaaggaatcgcgcaccacccgcttctgtctcatctgtaactacatcagcaggatt
attgaacctctgacctccagatgttccaaatttcgcttcaaacctctagccaatcagatc
caagaagagcgcctgctgatgatctgtgacaaggagaacctcaagtacaccaaagagagt
atagcagcgctggtgaaggtgtctgaaggagatctgcggaaagccatcaccttcctccag
agcgctgcgcgcctcaacgtcgacagggagatcacagagcgtgctgtaatagaaatagca
ggggttgtgcctcccaagatgatagacaacttactccagatctgcttcaaaggaacattt
gagaaactagaggttgcagtcagaaacatggtggatgaaggctatgcagccacacagatc
ctgagtcagctccatgaatctatcatagagcaggacctgagtgataaggagaagtcggcc
atcacagagaagatggcggttgtgagtaagtgtctgtcagatggagcagatgagtacctg
cagatgttgagtctctgttcagtcatcatgcaggaaacatcccagaacaactaa
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integrated database retrieval system