Lates calcarifer (barramundi perch): 108896983
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Entry
108896983 CDS
T04895
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108896983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108896983
03036 Chromosome and associated proteins [BR:
lcf03036
]
108896983
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108896983
Coactivators
SAGA/TFTC/STAGA complex
108896983
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108896983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108896983
NCBI-ProteinID:
XP_050933138
UniProt:
A0AAJ8BHH4
LinkDB
All DBs
Position
LG17:1297012..1314100
Genome browser
AA seq
745 aa
AA seq
DB search
MVLISPVFRKRSRSGGVQTHTHLQQTIFMDANKLVAEAQMLESSGAAEDGDSSVPVKTVL
VPAKCGPVSAAQPPLTAATVSKTDSVPGPPKVIPTGQSHQPTSSTVTAAVPGPQTTSPPV
MVVAKLATSGVVSANGQLQVTKPPLSQVTSMNQATTPGRTVVITVPRVAAPQPVAVAPRL
PQTASSQLPANIHIPPGMMLIRSDSGQLMLVSQQALAQAQQGPRAASGQASRIVAHQVSA
AAGSKSNEKVTVIRMTAPHTFQPAPVQKTAVVKVIGVAPKPAVVHTLSAASERGSQPRIQ
APVTETKKEPPPTLSQETLESVKKCKNFLVTLIKLASSDSRSANMANNVRGLVRSLLEGK
LEAEEFTEQLYHELKSTPQPCLVPFLKKSLPAVRHLTADPELFIQQASTSAHSSNTLSHT
MKQSITDTGQNVKTSQQVIQLPRGMILRPGTTTFAQSRNYISKSIRPNLKNTVVQSGKHL
TGTFSVKQPFTQDPPRSTKLAFKDCSGSYKEDDDINDVAFMAGVNLREENAQILTTMVGS
VVQSCQDQPFLTPNPVLSRILHTGQALGVTDVGPEVVALVSHATQECLRGLLERLTEMAE
HRKAAPKEDLWYTKVSDVRSQLRFLEEVESLNKKRRDEEERERLLRLARSRSHTEDPQHQ
QLKQRAKELQQIEAAQLQQREANLTALAAIGPRRKRPLEQTESQVSLLSRLGVHRVTRVM
LRDLLVCMEQDRFLRHSLTLYKAML
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcatctctcctgtgttccgcaaacgcagcaggtcaggaggagttcagacacac
acacacctgcaacagacaatatttatggacgcaaataagctggttgctgaagcccagatg
ctggagtccagtggggcggcagaggatggagactcctctgttccagtcaagacagtacta
gtcccagccaaatgtgggccagtaagtgctgcgcagcccccactcactgctgccactgtc
tcaaagactgactctgtccctggcccacctaaagtcatcccaactggtcagagccaccag
cctacatcctctacagttacagctgcagtcccagggccacagacaacctctccccctgtc
atggtggtagcaaagctggctacctcgggggtagtgagtgctaatggccagctacaggta
acaaaaccacctctaagtcaggtgacctccatgaaccaggccacgaccccaggaaggacg
gtggtgataactgtacccagagtagcagctccacagccggtcgctgtggcccctcgactg
ccacagactgcttcatcacagctcccagccaacatccacataccaccaggtatgatgttg
atccgcagtgatagtggacagctgatgctcgtatcccaacaggctttggcacaggctcag
cagggaccaagagctgccagtggtcaagcatccagaattgtggcccatcaggtgtctgca
gcagctggaagtaaaagcaatgagaaagtgacagtgatcaggatgacggctccacacact
ttccagcccgcaccagtccagaagactgctgtggtaaaggtcattggtgttgctcccaaa
ccagctgtagtccataccctgagtgctgcgtctgagcgggggagccagccccgcattcag
gcccctgtcacagaaaccaaaaaggagcctccacctacgttgagtcaggagaccctggaa
agtgtgaaaaaatgcaaaaacttccttgtaactctgatcaagctggcctccagtgactcc
aggtctgccaacatggccaacaacgtcaggggactggtcaggagtctgctggaagggaag
ctcgaagcagaggagttcacagaacagctgtatcatgagttgaagtcgactccacagccg
tgcttggtgccgttcctcaagaaaagccttcctgcagtgcgtcacctcactgcagaccct
gagttatttattcagcaggcctcaacttctgcccacagctccaataccttgtctcacacc
atgaagcagtccatcactgacacaggtcaaaacgtcaagaccagccagcaggttattcag
ctgcctcgagggatgattctgagacctgggacgactacatttgcccagtccagaaattac
atatctaagagcatcagacccaacctcaagaacactgtggtccagtcaggaaaacacctc
acaggaacgttttcagtgaaacagcctttcactcaggatccacctcgctctaccaagctt
gcattcaaggactgttcaggatcttacaaagaagatgatgacattaatgacgtggccttc
atggctggagtcaacctgagagaggagaatgcacagatcctgaccaccatggttggctct
gtggtgcagtcatgccaggatcagcccttcctcacacccaacccagtgctcagtcgaatc
cttcatacagggcaggcactgggagtaacagatgttggtccagaggtggttgctctggtt
tctcatgctactcaggagtgtctccgtggactgctggaaaggctcactgagatggcagag
catcgcaaggcagccccaaaggaggacctgtggtacaccaaagtgagcgatgtacgttct
cagcttcgcttcctggaggaagtggagagtttgaacaagaagaggagggatgaagaggag
agagagagactgctgcgtttggccagaagtcgctcacacactgaggatccacagcatcag
cagctcaagcaaagagccaaagagttacaacaaatagaagcagctcagctgcagcaaaga
gaggccaacctcacggccctggctgccatcgggcctcgcaggaagagacctctggagcag
actgaaagccaggtgtcactgctgtccagactgggtgttcacagagtgacgcgggtgatg
ctgagggatttgttggtgtgtatggagcaggaccgcttccttcgacactctctcactctg
tacaaagcgatgctctga
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