Lates calcarifer (barramundi perch): 108897177
Help
Entry
108897177 CDS
T04895
Name
(RefSeq) signal transducer and activator of transcription 1-alpha/beta isoform X3
KO
K11220
signal transducer and activator of transcription 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04217
Necroptosis
lcf04620
Toll-like receptor signaling pathway
lcf04621
NOD-like receptor signaling pathway
lcf04625
C-type lectin receptor signaling pathway
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108897177
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108897177
04621 NOD-like receptor signaling pathway
108897177
04625 C-type lectin receptor signaling pathway
108897177
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108897177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108897177
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
STAT
108897177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STAT_alpha
STAT_bind
STAT_linker
SH2
STAT_int
DUF1664
DASH_Spc19
ATG29_N
Motif
Other DBs
NCBI-GeneID:
108897177
NCBI-ProteinID:
XP_018552168
UniProt:
A0AAJ8B936
LinkDB
All DBs
Position
LG1:complement(24970080..25006213)
Genome browser
AA seq
689 aa
AA seq
DB search
MKIKQELVSMHSSCIWMNSGIILSRRTTFYPGPDFPGMKDYLVKHFQDEPLNLAVILSEC
LQEEKKVLASASEKQGCGSPAVQQKWKELDRGVNELKRQISEVKKEVKSLEFLYENLDYV
QKTWQNKVEQDSGLAQSNAAVKEGCLKQANFIMQTKQMMLQQIVNILNQAEQIVAALTDV
ELPEWKRRQQLACIGGPVDTSLDHLEEWFTAVADVLIQVNQELQKLQDQSKKYNSPDASS
FPGETENFTLSLLTKLLANALVVEKQPVMSSLPQRPLILKTGVRFTAAVRFLANLPEFKC
RVKVKPVFDKDVEETTAVHGLRHFAFNRDNSKVLDVDRPDGGLVAEFAHMSLKESKTRPR
GSCEQSRLGVTEELHVIKFVTELQFAGLSCNIEASSLPVVVISSTSQIPSAWASVMWCNM
LSTSEPRNLSLFVDPPPLTWQQLSQVLSWQFLSVGQRGLDEDQLSMLRDKIVDFSTDNPD
GIIHWDKFSKNESVWIWIDGILDLIKRHLVDLWQDGYIMGFVSRKTTWDLLKEKPTGTFL
IRFSESSKEGAVTFSFVEHSNGENNVHAVEPYTKKDLLAQSLPDSIDSYRMKEDLTRNPL
LYLYPDIHRDTAFGRYYSTEKAPITGYVTRRRVQVADYPTPPPSPPPVRMDIDPDAEQVI
QELFHDIYDSCGSPVWLTSYQDTPLTQYF
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaagcaagagcttgtttccatgcactcctcatgtatttggatgaacagtgga
atcattctctccaggagaacaactttttacccaggacctgattttccagggatgaaagac
tacttggtgaaacactttcaagatgagccactgaacttggctgtaatcctctctgaatgc
ctacaggaggaaaagaaagttctggcttcagcctctgagaaacagggttgtggcagtcca
gctgtgcaacagaaatggaaagagctggacagaggagtcaatgaactgaaaagacagatt
tcggaggtaaagaaggaagttaagtcactggagttcctgtatgaaaaccttgactatgta
cagaagacctggcaaaacaaagtggagcaggacagtggattggcccagtccaatgctgct
gtgaaagaggggtgtctgaagcaggccaactttatcatgcaaacaaagcagatgatgctg
cagcagatagtgaacattttaaaccaggcagagcagattgttgcagctctcactgatgtg
gagctgcctgagtggaagcgcaggcagcagctggcctgcattggaggtccagtcgacacc
agtctggaccacctcgaggagtggttcacagctgtggcagacgtgctaatacaagtaaac
caagagctgcagaaactacaagaccagagcaagaaatacaacagccctgatgcctccagc
ttccctggagaaactgagaactttacactgtccttactcacaaaacttctggcaaatgct
ctagtggtggagaaacaacccgtcatgtcgagtttaccacaacgacctctgattcttaag
accggggtgcggttcacagcagcagtcaggttcttggcaaatctccctgaattcaagtgc
cgggttaaagtaaaacctgtatttgacaaggatgttgaagaaaccacagctgttcatggg
ctccgtcactttgctttcaacagggataacagtaaggtgttggatgtggacaggcctgat
ggaggcttggtggcagaatttgcgcacatgtcactcaaggaaagcaaaacaagacccaga
ggatcatgtgagcagagtcgcctgggcgtcactgaagaactccatgtcattaagtttgtg
acagagctccagtttgctggactgagttgtaacatcgaggccagctccctgcctgtggtt
gtcatctccagtaccagtcagatccccagtgcctgggcctctgtcatgtggtgtaacatg
ctgtccaccagcgaaccaaggaacctgtcattgtttgtcgaccctcctccactcacctgg
cagcagctgtcacaggttctgagctggcagtttttgtctgttggccaacgaggacttgat
gaagatcagctctccatgctgagagacaaaattgtggatttctccacagataatcctgat
ggtattattcattgggacaagttctccaagaatgaaagtgtctggatttggattgatgga
atcctggatttgatcaaaagacacctagtggatctttggcaggatgggtacatcatgggg
ttcgtaagcaggaagacaacatgggacctgttgaaggaaaaaccgactgggacctttctg
attcgctttagcgagagcagtaaagaaggagctgtcactttcagctttgttgaacactcc
aatggtgagaacaatgtgcatgcagtagagccctacaccaagaaggatctgttggcccag
tctctgccagacagtattgacagctatcgaatgaaggaggacttgaccaggaatcctctg
ctgtatctctacccagacatccacagagacactgcctttggacgctactacagcactgaa
aaggcacctataacggggtacgtcaccagaagacgcgtccaagtcgcagactatcctacg
ccacctccatctccacctccggtgcgcatggacatcgacccagatgcagagcaagtgatt
caggaactcttccacgatatctatgattcatgtggatctcctgtatggttgacatcttat
caagatacaccactaactcagtatttttaa
DBGET
integrated database retrieval system
