Lates calcarifer (barramundi perch): 108897233
Help
Entry
108897233 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108897233
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
108897233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
108897233
NCBI-ProteinID:
XP_018552269
UniProt:
A0AAJ7QCB3
LinkDB
All DBs
Position
LG9:1748368..1756458
Genome browser
AA seq
1052 aa
AA seq
DB search
MDYQFPQQLFPSFYNCGPPNSVLKHCAGKWGSYDRVRPQGGSGPLSDWTFTSRHQVRGEA
WRHTEPVPVPLLSPKHSYLWPSKPPDPLDFTEHMQNFFTDHFHDAFGCMSDILGENFNFN
EGKKERYRRDSVKMQRVNHFLEKLKFKICHQSYSSRVLDAYSGLLSDVVHSVPPELLGSL
LYEELTEQRDRLLFSEGATGGALSFIPFSQSSSGGSQHGCLLYPGNQGLDRLNFHRVELQ
HHRGTPSVLETSSRDPFSFQLKGPVRQISSTSLFNTCCVAVRSDRLCGVWRFGERDEPRL
LQVVNTSEVATCISVSPHILGEVLVASESGAVNLWTVGKGMQKVREEDSNLYFNAKSSWR
WCEFSAHPRVMLYADRTGVELTDIRVSPVSGHTLFRISSASECRSGERLILSRYLGDAHA
FHHLITTQYSAYIMDERFPCVPMLKFDHMMQSPPMFCHVLPGSASRTTKVLLGSHSSQEI
TLLQYSGGRAEACSSRGPAQALLRPRDSLKHLPVQIPHRLDTATDRLSSPAAGLTCIQKK
GGEECICILQLTEAGDIFYQILEPEQPDAAAEDDPTLRETKTTSAEQLVPDSQVVMSNDE
DIIGPTQAPTVPRFVAETPEREQPAGIVCSDSEDSASERKSRRLKQLRLQVVVNDDPEPG
HESGSDTGVKGGKVGGDEAQEEAAGVCSSERQTEVKLSDGALITWKHWLQKLMQKSRDKK
PRPRCSQHFTIDTKDLLHLSGDEAIASADEDRVRSLRRDLRACMSKRSLLVHGSVSTSVR
AADVEPLPNPVDTEAWRDQLSHRLTLSWQGEEVWRAWWEDHLGLNKDAKVEALRRKRRRQ
KEAKRAAGGRLELSGSFTSSVSYQSDLDNFSDSTGWSSTASQGMWSDAEGSGPLSRLEGY
LEHGTPRPTTPSAVQNDTPVTTPATTPQRVKNKPGDQQNSRTPVKLDSTPASQRRSKRPA
GDDLSYLFATQDESSQRNFFYPEDESGVQPPPPPSTSSQLPSSQPVRLKNLSVDLSQDSF
VRSGFSQSQSSQGRRGLSQASQAKKKKSRMGF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagttcccacagcagcttttcccttcgttctacaactgcggaccgccgaac
tcggtcctgaaacactgcgccgggaagtggggcagctacgaccgggtcagacctcagggc
ggttctggtcctctctccgactggaccttcacatccaggcatcaggtccgaggggaggcg
tggcgtcacactgagcctgtaccggttcccctgctgtcgcctaaacactcttacctgtgg
ccttcaaagcctccagatccactggacttcacagaacatatgcagaacttcttcactgat
cacttccatgacgccttcgggtgcatgagtgacattctgggtgaaaactttaactttaac
gaaggaaagaaagagagatatcggagggattcagtcaagatgcagagggtgaaccacttc
cttgaaaagctgaagtttaaaatatgtcatcagtcgtattcctcccgagtgctggacgcc
tacagcggcctcctgtcggacgtggttcactccgtccctcctgagctgctcggctcgctg
ctgtacgaggagctgacggagcagagggaccgtctgctcttctctgaaggggccacaggt
ggcgctctgagcttcatccccttctcacagagcagcagtggtggctctcaacatggctgc
ctcctgtaccctggaaaccagggactggaccgcctcaacttccacagggtggagctgcag
caccacagaggaacgccctctgttctggaaaccagcagcagagacccattcagcttccag
ctgaaaggccccgtcagacagatcagctccacctccctgttcaacacctgttgcgttgcc
gtgcggtcggatcgcctgtgtggcgtctggaggttcggcgaaagagacgagcctcgtctg
ctgcaggtcgtcaacaccagtgaggtcgcgacctgcatcagcgtcagtcctcacatctta
ggtgaagtcctggtggcgagtgagagcggagcggtgaacctgtggactgtcggcaaaggg
atgcagaaggtccgggaggaggacagcaacctgtacttcaacgccaagtcgtcgtggcga
tggtgcgagttctccgcccacccgagggtgatgctgtacgcagacaggacgggggtggag
ctcacagacatcagggtgagtcctgtctctggtcacactttgtttcgtatcagcagcgcc
tccgagtgtcggagcggcgagagactcatcctgtccaggtatctgggagacgcccacgcc
ttccaccacctcatcaccactcagtactcggcgtacatcatggacgagcgtttcccctgc
gtgcccatgttaaagtttgatcacatgatgcagtctccgcccatgttctgtcacgtcctt
cccggctccgcctccagaaccacaaaggtcctgctgggctcccacagttctcaggaaatc
accctgctgcagtactcaggaggcagagcagaggcctgttccagtcgaggtcctgctcaa
gctctgctcagacccagagacagcctgaaacaccttccggtccagatccctcaccgtctg
gacaccgccaccgaccgactgtcctcccctgctgcaggtctgacatgtattcagaagaaa
ggaggagaggagtgcatctgtatcctgcagctgacggaggcaggagacattttctaccag
atcctggagccggagcagccggatgctgcagcagaagacgacccaacattgagagaaacc
aaaacaacatcagcagaacaacttgtaccagattctcaggtggttatgtcgaacgacgag
gatataatcgggccaactcaggctccgactgtgccgaggtttgtggctgaaacaccagag
agggaacaaccagcggggatcgtgtgctctgactctgaggattcagcgtcagagagaaaa
agtcgaaggctgaagcagctgcggctgcaggtcgtcgtcaatgacgatccagagccgggt
catgagagtggatcggacacaggagtgaaaggtggaaaggtgggtggagatgaagctcag
gaggaagcagctggcgtttgttcctcagagcgtcagactgaagtaaaactcagcgacggc
gctctcatcacctggaaacactggctccagaaactgatgcagaagagtcgagataagaag
ccacgcccacgctgctcgcagcacttcaccatcgacaccaaagacctgctccacctgtcc
ggcgatgaagcgatagcttcggctgatgaggatcgcgtgcggagcctgaggcgagatctg
agagcgtgcatgtccaaacgttcgctgctggttcacggctccgtctccacctccgtcaga
gccgcagacgtagagccgctgccgaacccggtggacacggaggcctggagggatcagctc
agccaccgcctcaccctgtcctggcagggggaggaggtgtggcgggcgtggtgggaggat
cacctggggctgaacaaggacgcaaaggtggaggctctgaggaggaagaggaggaggcag
aaggaggcgaagcgagcggccggcggacgcctggagctgtcggggagcttcacctcatcc
gtcagctaccagtcggatctggacaacttctccgactcgacgggctggtcctccacagcg
agccaggggatgtggtccgacgccgaggggtcggggccgctgtcccggttggagggctac
ttggagcacgggaccccgagacccacgacaccttccgctgtgcaaaacgacaccccagta
accacgccagccaccacacctcaaagggttaaaaataaaccaggagaccagcagaattcc
aggacccccgtaaaactggactccacaccagccagtcagaggaggagcaaacgtccagcg
ggggacgacctcagctacctgtttgcaacacaggacgaatcctcgcagcgcaactttttc
tacccggaagacgagagcggcgtgcagcctccacctccaccctccacctcctctcagctc
cccagctcgcagcctgtccgtctgaagaacctcagcgtggatctgtcccaggactccttc
gtccggtcgggtttctcccagtcccagagttcacagggtcgacgggggctgtcgcaggca
tcgcaggccaagaagaagaagtctcggatgggattttga
DBGET
integrated database retrieval system
