Lates calcarifer (barramundi perch): 108897316
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Entry
108897316 CDS
T04895
Name
(RefSeq) serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04382
Cornified envelope formation
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108897316
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108897316
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108897316
09158 Development and regeneration
04382 Cornified envelope formation
108897316
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108897316
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108897316
03036 Chromosome and associated proteins [BR:
lcf03036
]
108897316
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108897316
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108897316
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108897316
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
Beta-prop_EML
Beta-prop_IFT140_1st
DSE1_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_HPS5
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
108897316
NCBI-ProteinID:
XP_018552401
UniProt:
A0A4W6D823
LinkDB
All DBs
Position
LG16_LG22:complement(11043810..11048797)
Genome browser
AA seq
447 aa
AA seq
DB search
MAGVAGGNDFQWCFSQVKGAIDEDVAEADIISTVEFNYSGELLATGDKGGRVVIFQHEQE
SKNRPHLRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIK
LWKISERDKRAEGYNLKDEDGRLRDPFRITSLRVPVLMPMDLMVEASPRRIFANAHTYHI
NSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAECHPHQCN
VFVYSSSKGTIRLCDMRAAALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYM
MTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTG
SYNNFFRMFDRNTRRDITLEASRESSKPRATLKPRKVSTGGKRKKDEISVDSLDFNKKIL
HTAWHPKDNVIAVAATNNLYIFQDKIN
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagttgcaggaggaaatgattttcagtggtgtttctctcaagtgaaaggagcg
atagatgaggatgttgcggaagctgacataatctcaacagtcgagttcaactattctgga
gaattgcttgcaactggagataaaggaggcagagtagtgatatttcaacatgaacaggag
tcaaagaatcgtccacacctgcgcggggagtacaacgtctatagcacttttcagagtcac
gagccagaatttgactatttgaaaagtttagaaatcgaggaaaaaataaataaaataaga
tggctaccccaacaaaatgctgctcactttctactttcgacaaatgataaaactatcaaa
ttgtggaaaataagtgaaagagataaacgagcagaaggttacaacctgaaagatgaagat
ggacgactcagagacccctttagaatcacctctttacgggtaccagtactgatgccaatg
gatctcatggtagaagcaagcccacggaggatctttgcaaatgcgcacacctatcacatt
aattccatttctgtaaatagtgatcatgaaacgtacctctccgcagatgacctaagaata
aatctatggcacttggaaatcacagacagaagttttaatattgtagacatcaagcctgcc
aacatggaggaactgacagaagtaatcacagctgctgagtgccatccacaccaatgcaat
gtatttgtgtacagcagtagcaaaggcaccatccgcctgtgtgacatgcgagcagcggcg
ctctgcgataggcactcaaagttcttcgaggagcctgaggatccaagcagccgatccttt
ttctctgagatcatctcctccatctccgacgtgaagttcagtcacagcggacgctatatg
atgacacgtgactacctctccgtcaaagtctgggacctcaacatggagaacaggccagtg
gagacatatcaggtccatgaataccttcgcagtaaactctgctccttgtatgaaaatgac
tgcatcttcgacaagtttgagtgctgctggaatggcagtgacagtgccatcatgaccggc
tcctacaacaacttcttccgaatgtttgaccgcaacaccaggcgggacatcacactggag
gcgtcccgggagagcagcaaaccacgggccacgctcaaaccccgcaaagtgtccactggt
ggcaagaggaagaaggatgagatcagcgtggacagcctggacttcaacaagaagatcctc
cacactgcctggcaccccaaagataacgtgatagctgtggcagccaccaacaacttgtac
attttccaggacaaaatcaactag
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