Lates calcarifer (barramundi perch): 108897340
Help
Entry
108897340 CDS
T04895
Symbol
sorcs3b
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108897340 (sorcs3b)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Others
Others
108897340 (sorcs3b)
Endosome - Lysosome transport
108897340 (sorcs3b)
Endosome - Golgi transport
108897340 (sorcs3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
108897340
NCBI-ProteinID:
XP_018552433
UniProt:
A0A4W6D0I6
LinkDB
All DBs
Position
LG16_LG22:10859398..10898990
Genome browser
AA seq
1234 aa
AA seq
DB search
MVLWSFWSFCLLTFVLLDPFHSKFGAQAEISSPRANDRFYRLEVMPLEVRVKVSPKVDNC
TKVLNGYETEADGAANPNNGKQEGNETQSGPRHEAPSVVETAPNYHSRLKIPGKKYGNIS
TDNQPTANIFPRKKVKRSAGPTFSENVDRSISGEAQSRGRFVETVQGVSNSRAEYRRGGE
EARVSNPRQSEPHLDTSTFALSGDSAHNQAMVHWSGHNSSVILILTKLYDFNLGAVTESS
LWRSTDYGSTYIKLNDKVGSRTVLSYLYVCPTNKQKIMMLSDPEVESAVLISSDEGASFE
KHPINFNILSLLFHPAQENWMLAYSHDRKLYSSMDFGRKWQLVHDNVMPGRFYWAVMGLD
KESDVVHIETHIAKGRAQYVKCRAQRCTEGNRQYLFPGHVDTNSLVVQDEYVFTQVTKAG
RASYFVSYMRESFKRMKLPKYCLPKDMHIISTDEKQVFAAVQEWNQNNTYSLYISDSPGV
YFTLSLENLRTSRGPAGNLLVDFYKVEGINGMYLANKLVDNHIKTFITYNKGQTWALLPA
PASDVAGNNLHCILPFCSLHLHLEMVENPYTSGPITSKKSVPGIIVATGNIGTELSSTNL
GMFITSDAGNSWRQIFDEEYNIWFLDNGGALLAVLHAATPIRHLWISLDEGKKWDRHSFS
LAPLYVDGVLMEPESDNHIITFFGHFSHRSEWQLIKIDYKGLFSRRCMDGDYQTWHLHNK
GELCVMGEKQIFMKRRPGNRCMLAQDYSRIYSSEPCLCTAYDFECDYGWERQADGKCSPA
FWFNPNGAAKSCSTSQSFLNSTGYRKVLSNNCKEGGKNVYSPRRQACRPRPPRGLRLSTS
QGELSSTVGSNVTFMVYLDDGDSLRTSIQLDFGDGIKITYSNLSRTDDGIKHIYRTTGIY
RVTASAENSQGSDSSTLFLHITSPVERVYLSAPIVAIRGKEANLTAVVWPSHTRTLTFFW
WLDNSSEPIITLEGSISYTFHREGKNKVTVQVASGSTVMQDSKVITVKEFFRSLLLSFSP
ALDEHNPDIPEWREDIGRVVRTALSQVSGVSEDQLLVSLYPGLPTTAELFILPDEHTSSE
HKRRSEEALETISDIFVTALNQGLIQFELKADIRIIVYMTHQTLAPLVDSNTIHSGSAML
MLLTVVFVGLAAFFIYKFKRKLPWIHVQTEDSHEKEPEVISTVGQNDNMTKVKLSEFPSP
KELMAKDLETRSRGGIGRNMERIVTREFPNCTNV
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggtactgtggtcattttggagtttttgtcttttgactttcgtgttgctcgaccccttt
cactccaagtttggggctcaagcggaaataagttctcccagggcaaacgatagattttat
cgtctggaggtcatgccgctggaagtacgcgtcaaagtgtcacccaaagtcgacaattgc
acaaaagttttaaatggttatgagacggaagcagacggtgctgcgaatccgaacaatggc
aagcaagaggggaatgaaacacagagcggaccgagacacgaagcaccgagcgtcgttgaa
acggcaccaaactatcacagtcggctcaaaatacctggtaaaaagtatggcaacatttcc
acggacaaccaacctacagcgaatatttttcccagaaagaaggttaaaaggagcgcgggt
ccgacgttcagcgaaaatgtggataggagtataagtggagaagcgcagtcaagagggaga
tttgtggagactgtccaaggtgtttccaactccagagccgaataccggcgcggaggggag
gaagccagagtgtctaacccgagacagagtgagcctcacctggacacctctacttttgct
ctatcgggagactcggcacacaaccaggcgatggtgcactggtccggacacaacagcagc
gtgatcctgattttgactaagctgtatgacttcaacctgggggctgttactgaaagctca
ctctggagatccactgattatggaagcacctacatcaaactcaatgacaaagtgggttca
aggacggttttaagttacctgtacgtctgcccaaccaacaaacagaagataatgatgctt
agcgacccagaggtagagagcgctgttctcatcagttcagatgaaggggcaagctttgag
aagcatcccattaacttcaacatcctgagcctgctcttccacccggcacaggagaactgg
atgctggcttacagtcacgaccgcaagctgtacagttcaatggactttgggaggaagtgg
cagcttgttcacgacaacgtgatgccaggccgattctactgggcggtaatggggctggac
aaagaatcagatgtggtccacatcgagacgcacattgcgaaaggccgcgctcagtacgtg
aagtgcagagcccagcgatgcacagaaggcaacagacagtacctctttcctggacacgta
gacaccaactcactggttgtgcaggacgaatatgttttcacgcaggtaaccaaggcagga
cgagccagctactttgtctcctacatgagagaatccttcaagcggatgaaattacctaaa
tattgtctaccaaaggacatgcatatcatcagtacagatgagaagcaggtctttgctgca
gtccaggagtggaatcagaacaacacttacagcctgtatatctccgactcccctggggtc
tactttaccctttcattagagaatctgagaaccagcagaggacctgccggtaacctactg
gtcgacttttataaggttgaggggataaatggcatgtatctcgccaacaaactggtggat
aatcacatcaagacttttatcacctacaacaagggacaaacatgggcccttctgccagct
cctgcctctgatgtggctggaaataaccttcactgcattctgccattttgctcgctgcat
cttcatctggagatggtggagaatccctacacgtcaggacccatcaccagcaaaaagtct
gtaccaggaatcattgtggctacagggaatatcggtacagagctgtcctccaccaacctt
gggatgtttataacatcagatgcagggaatagctggagacagatttttgatgaagagtac
aacatttggtttcttgacaatggcggggctctgctggcagtcttacatgcagctacgcca
atccgacacttgtggatcagtctcgatgaaggaaagaagtgggatcgtcacagtttttcc
ttggcgcctctgtatgtggatggtgttttaatggaaccagaatctgacaatcacattatc
actttctttggacacttcagccatcggtcagagtggcagctgatcaagatcgactacaag
ggactctttagcaggagatgcatggacggagattatcagacatggcacctgcacaacaag
ggagagctgtgtgtgatgggggagaagcagatctttatgaagcgcaggccaggcaaccgt
tgcatgctggctcaggactactccaggatctattcctcagagccatgcctctgcacagcc
tatgattttgaatgtgattatgggtgggagcgccaggcggatgggaagtgctcccctgct
ttttggtttaatccaaatggtgcggctaaaagctgtagcaccagccaaagcttccttaac
agcacagggtatcggaaggttttgtccaataactgtaaggagggaggaaagaacgtgtat
tcgcccaggaggcaggcgtgtcgtcccagaccacctcgaggcctccgtctgtccaccagt
caaggagagctcagttccactgttggaagtaacgttactttcatggtttaccttgacgat
ggagactcgctgagaaccagcattcagctagactttggggacggcatcaagatcacatac
tctaacctgagcaggactgatgatggcatcaagcacatctacagaacgactgggatttac
cgagtgacagcttcagctgaaaacagccagggatctgacagcagcacactgtttttacac
atcaccagtccagtggagcgtgtatatctctccgctcctattgttgccatcagggggaag
gaggctaatctgaccgcagtggtgtggccgagtcacaccagaacattgaccttcttctgg
tggcttgacaacagctctgagcccattataaccttggagggaagcatctcttacacgttt
cacagagagggaaaaaacaaggtcacggtccaggttgcttctgggagcaccgtaatgcag
gattcaaaagttataactgttaaagagttcttcaggtcgctgctgttgtcgttctcgcca
gcgcttgatgagcacaatcctgacatccccgagtggagggaggacataggccgtgtggtg
cggacagctctgtcacaggtgtccggggtttctgaagatcaacttctggtatctctgtac
ccaggacttccaaccactgcagagctctttatcctgcctgatgagcatacatcaagtgag
cacaagagaaggagcgaggaggctttggagacgatatcagatatttttgtcactgccctg
aaccaaggcctgatccagtttgaactgaaagctgatatccgcatcattgtgtatatgact
caccaaactttggcaccacttgtggattcaaacaccatccacagtgggtctgccatgctg
atgctgctcactgtggtatttgttggtttagccgcattcttcatctacaagttcaaaaga
aaattaccttggatccacgttcagactgaggacagtcatgagaaagaaccggaagtgatc
agcacagtcggtcagaacgacaacatgaccaaggtgaagcttagtgagtttccctctcca
aaagaactcatggcgaaggatctggagaccaggagccgaggcggaattggaagaaatatg
gagagaattgttacaagggaatttccaaattgtactaatgtctaa
DBGET
integrated database retrieval system
