Lates calcarifer (barramundi perch): 108897402
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Entry
108897402 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108897402
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108897402
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
108897402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
Cas3-like_C_2
YbjM
AAA_22
Motif
Other DBs
NCBI-GeneID:
108897402
NCBI-ProteinID:
XP_018552520
UniProt:
A0AAJ7VGH3
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Position
LG9:1543602..1547980
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AA seq
596 aa
AA seq
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MDNTTDSTWDSLPVKLNEGILQTLEELKFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMEQFIHKFPQFTQILLIGG
TNPIEDVEKFKDQGANIVIATPGRLEDMFRRKADGLDLASAVRSLDVLVLDEADRLLDMG
FEASLNTILSYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATAIQKTPA
RLSNYYTICKSEDKFNNLVAFLRQHKHEKQLVFFSTCACVEYYGRALETLVKKVTVHCIH
GKMKHKRNKIFADFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNQGNALVFLLPMEETYVNFLSINQKCPLQKMPPIGDVVDVLPKVKAMSLADRAMFDR
GMRAFVSYVQAYAKHECSLIFRIKDLDFASLARGFALLRLPKMPELRGKTFPDFTETTVD
TETIRYKDKNREKQRRKMLQEKDKTPLPKKNFTKNKAWSKQKNKKERRKKMSAKRKHDEG
SDVDDEDMNELLNDTRLLKKLKKGQISEEDFEKQITSGPKSKHKTDGPSHGSSDEA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaccacagacagcacgtgggacagtttacctgttaaactgaacgagggcatt
ttacaaacgctcgaggagctgaaattcactcacatgacacctgtacagtctgcgtgtatc
ccgctgttcatgagcaacaaagatgtggctgcagaggcggtgaccgggagcggaaagact
ctggctttcgtcatccccatcatcgagctgctcctgaagagagaagagaagctgaagaag
atgcaggttggtgccctggtgatcacccccacaagagaactggccctgcagatcagtgag
gtgatggagcagtttatccacaagtttccacagtttacgcagattttactgattggtggc
actaacccgatagaggatgtggagaagttcaaggatcaaggggcaaacatcgtgatcgcg
acgcccggccgtctggaggatatgttcaggaggaaggcggatggtctggacttggccagc
gcagtcaggagtctggacgtgctggttctcgacgaggccgacaggctgctggacatgggc
tttgaggccagtctgaacaccatcttgagctacctgcctaaacagagacgtacaggcctg
ttctcagccactcagacacaggagctggagaagctggtgagggccggcctcaggaacccc
gtccggatcaccgtcaaagagaaaggcgtggccgccaccgccatccagaaaacccccgct
cgactttccaactactacactatttgcaaatccgaggacaagttcaacaacctggtggca
tttctacggcaacacaagcacgagaagcagctggtcttcttcagcacgtgtgcgtgtgtg
gagtactacggtcgagctctggagacgctggtgaagaaggtcaccgtccactgcatccac
ggaaagatgaaacacaaacgcaacaagatctttgccgactttcgggccctgaaaagtggg
atcctggtgtgcacagacgtcatggccagaggcattgatatccctgatgtgaactgggtg
ctgcagtatgatcctcccagcagtgccagtgcctttgtgcatcgatgtgggcgaacagcg
cgcattggtaaccaaggcaacgccctcgtctttctgctgccgatggaggaaacatacgtc
aacttcttgtccatcaaccagaaatgcccgctccagaagatgccccctataggtgatgtt
gtggatgtgctgcccaaagtgaaggccatgtctctggcagaccgcgccatgtttgacaga
ggcatgagggccttcgtctcgtacgtccaggcctacgccaaacacgaatgtagtctcatt
ttcagaatcaaagatctggactttgcctcgttggcccgtggcttcgccctcctccgcctg
ccgaagatgcctgaactgagagggaaaacgttccctgatttcacggagacaacagtggac
acagagaccatccgctacaaggacaagaacagggagaaacagagacggaagatgctgcag
gagaaagacaagactccacttcccaagaagaatttcacaaagaacaaagcctggtccaaa
cagaagaacaagaaggaacgcaggaaaaagatgtccgccaagaggaagcacgacgaggga
tctgacgtggacgacgaagacatgaacgagcttttaaatgacactcgcctcctcaagaaa
ctaaagaaagggcaaatcagcgaggaggactttgagaaacagataacaagcggaccaaag
tcaaaacacaaaacagacggaccatcacacggcagctcagatgaagcctga
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