Lates calcarifer (barramundi perch): 108897498
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Entry
108897498 CDS
T04895
Symbol
samm50l
Name
(RefSeq) sorting and assembly machinery component 50 homolog B
KO
K07277
outer membrane protein insertion porin family
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108897498 (samm50l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108897498 (samm50l)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108897498 (samm50l)
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial protein import machinery
Outer membrane
TOB/SAM complex
108897498 (samm50l)
Transporters [BR:
lcf02000
]
Other transporters
Pores ion channels [TC:
1
]
108897498 (samm50l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Omp85
POTRA
Motif
Other DBs
NCBI-GeneID:
108897498
NCBI-ProteinID:
XP_018552681
UniProt:
A0A4W6ENG7
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Position
LG18:complement(17010583..17019771)
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AA seq
470 aa
AA seq
DB search
MGTVHAKSLDPLPMHGRDLGVNADDWVEPPEPEQEAKQEILENKDVVVQHVNIQGLGRTK
EDLLGYEISDVFHAKNLIDVMKKAHVARQRLLRLGIFNEVEVLIDTSEGADALPNGLDVT
FEVTEIKRLTGSYNTMVGNNEGSMVLGLKLPNMFGRAEKLTFQFSYGTKETSYGLSFFKP
QPGHFERNLTLNMYKVTGQFPWSSLKETDRGLSAELNFPLGMTNHTLKWEGVWRELGCLA
RSASFAVREESGHSLKSALSHTVSIDSRNSAIFPSRGALLRINQELAGYTGGDASFLKED
FELQLNRRLFWDSVLSASLWGGMLYPIGGQPSCIADRFYLGGPTSVRGFGMYSIGPQSEG
DYLGGEAYWAGGLHLYTPLPFRPGKGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLQKLA
ECIRWSYGAGIVLRLGNIARLELNYCVPMGVQSGDRICDGVQFGAGIRFL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggggactgtccatgctaagagtctggatcctctcccgatgcatggccgggacttgggc
gtcaatgctgacgactgggtggagcctccagagccagagcaggaggccaagcaggagatc
cttgaaaacaaagatgtggttgtccaacatgtcaacatccagggtcttggaagaactaaa
gaggatctgctcggctacgagatctctgacgtcttccacgccaaaaacctaattgatgtg
atgaaaaaagctcacgttgccaggcagaggctgctccgcctgggaatcttcaatgaggtg
gaggttcttattgatacatctgaaggtgcagacgctttgcccaatggtctagatgtaacc
tttgaggtgacagagatcaagagactgacgggaagctacaacaccatggtcggcaacaat
gaaggaagcatggtgctgggtctgaaacttcccaacatgttcggtcgagctgagaaactc
accttccagttctcctatgggaccaaggagacatcctacggcctgtcgtttttcaagccc
cagcccggacattttgaacgcaacctcacactcaacatgtacaaagttaccggtcagttc
ccatggagctccttaaaagagactgacagaggcctgtctgcagaactaaactttcctctc
ggaatgacaaaccacacactgaagtgggagggtgtatggagggagctgggctgcctggcc
cgcagcgcttcctttgccgtgcgagaggagagtggacactcgctgaaatctgctctctcg
cacactgtgtcaattgactcaaggaattctgccattttcccgagcagaggtgcgttactc
cggatcaaccaggagctggctggatacactggaggagacgccagcttcttgaaagaggat
tttgagctgcagcttaacagacggctcttctgggactcagtcttgtcagcttctctgtgg
ggtggaatgctttatcctattggaggacaaccatcatgcattgctgacaggttctacctt
ggaggtcccaccagtgtacgaggatttgggatgtacagcattgggccacaaagtgaagga
gattatctgggtggagaggcgtactgggcaggaggcctgcacctctacacccctctgccc
ttcagaccaggcaagggtggttttggagaccttttcaggacacatttctttctcaatgct
ggcaacctctgtaacctcaactacggtgagggtccccgggcgcaccttcagaagctagcc
gagtgtattcgctggtcgtatggagcaggcatcgtgctgcggcttggaaacattgccaga
ctggagctcaactactgtgtgcccatgggagttcagagtggggacaggatatgtgatggt
gtccagtttggagcgggaattcgcttcctgtaa
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