Lates calcarifer (barramundi perch): 108897583
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Entry
108897583 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108897583
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108897583
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
108897583
NCBI-ProteinID:
XP_018552802
UniProt:
A0AAJ7VGJ2
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All DBs
Position
LG18:complement(10989000..11013465)
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AA seq
1781 aa
AA seq
DB search
MSLVIHFLTTLALCWCPVRALVPEFADVCTEGSCYPATGDLLIGRAHKLTASSTCGLKQP
ERFCIVGHLEEEKKCFACDSKQMYDEDVNPVSHTIENVVTTFAPNRLKTWWQSENGVENV
TIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCESSFPGVSTGP
MVRVDDIICDARYSDIEPSTEGEVILRVLDPAFKIEDPYSPRIQNMLKITNLRVKFIKLH
TLGDNLLDSRDEVTEKYYYALYDMVVRGNCFCYGHASECAPIDGAPIGAEGMVHGRCVCN
HNTEGLNCERCQDFYHDLPWRPAEGRNTHACKRCECNHHSTSCHFDLAMYMTTGNVSGGV
CDDCQHNTVGRQCEQCAPFFYQHPNRDLRDPNVCEPCNCDPAGSLQGGLCDSRTDVAAGL
ISGQCRCKAYVEGERCDHCRQGHYGLGQGPQGCLPCTCNLLGTLPGGNSCDSISGRCFCK
RLVDGHNCDQCLPQHWGLSNDMDGCRPCDCDQGGAVNNNCDPHSGQCVCREHMFGRRCDQ
VESGFYFIALDHYTYEAEDAKHGPGVTVVQRPYPQDRSPTWTGMGFVNVPEGAYLEFNIN
NIPESMDYDILIRYEPQLPEQWEQVNVRVQRPVYTPPAFSGHCSNSIQSGDEQSISLPPG
SRHVLLVRPVCFEKGLNYTVRLSLPLYSSFSDVQSPYTLIDSLVLMPRVVELDMFNGVDG
EGAWDTFQRYRCLESSQSVVKSPMTDICNDYIFSVSALLHKGAMACQCDPQGSLSGVCEA
SGGQCRCRHNVVGRNCDHCAPATFLFSPAGCRPCDCDLRGSVSAFCHEATGQCNCVSGAS
GRQCSHCLPGFWGFPQCRPCHCNGHSEYCHPQTGECQGCRDFTTGHNCERCLAGYHGNPE
LGSGSHCRPCMCPDGPRSGRQFADSCYLLDYSNQLVCVCSPGYKGARCDECAPGYFGNPL
VPGGRCLPCQCNNNIDMHDPGSCDARTGACLKCLHHTEGYGCQHCKPGYYGRAATQSCRK
CMCYSVGTVSRVCSSPDECQCDQLTGQCPCQPNVVGQNCDRCAPDTWNIASGTGCQHCDC
DPVHSFGSSCDEVTGQCSCKPGFGGRTCRECRELFWGNPEVKCHACDCDPRGXSSQQCHR
ATGQCTCVEGVSGQRCDKCARGYQGEFPVCKPCHQCFAIWDTVVGELTNQTRRLETQVTE
LQTSGVTAPYKELIGSLERNVKAVREIVESNPAAVKLEQIQELMHQIIGLMSYLNGKLNT
TEETLNQLHDDANATDVNLDALMDEANQLELRVQEVRQQVYDAKNANIQGAMDTIASAHM
KSTMAEIKANASTTDPGNTVEQSATVRKATEDKLSSGQKEFDRKHQRNTQKLDKLSNELD
NFDLSPLSEKTCGGAAEGDACSSSSCGGLGCVGEDGAPLCGGEGCEGLVTTSQTALKSAK
DLDQEILAAMQEVDKLSRMVWEASIRANEAKANAQEVLVKSNRSKERVEQSNEQLRNLIK
EIRDLLTNDKADVSVIEKVANEVLALEMPTSSEKLQELTKEIREKVSTLTSVETILNQSA
EDIQAAETLLKEAKAASEQASNMKQTADVVKAALDETERAQSIAMDAIKLAQNNTKGTLD
LVISVESETAKSELKLGNTTGRLVQLEREVGLLRQNNLEVNRLAETADWITDQARKDAEE
AQQEFDMEVKDKFEEVEDLVEDKGESVLQARRRADELQQEAKELLAQSSSKLQRLGELER
SYEANQQILEAKAAELAELEQAVRRVLEEISHKVTLYSTCQ
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgtaatccactttctaacaactttggccctgtgctggtgtcctgtcagggcg
ctggtcccggagtttgcggacgtttgcaccgaaggcagctgctaccccgccacaggtgac
ctgctgatcggccgggcgcacaagctcaccgcctcctccacctgcggcctgaagcagccg
gagcgcttctgcatcgtcggacatctggaggaggagaagaaatgtttcgcgtgcgactcc
aagcagatgtacgacgaggacgtcaaccctgtcagccacaccattgagaacgtggtcacc
accttcgcccccaaccgcctcaaaacctggtggcagtcggagaacggtgtggaaaatgtg
accatccagctggatctggaggctgagtttcacttcacgcaccttatcatgaccttcaag
acgtttcgtccggctgccatggtgatcgagcggtccatggactttgggaagacttggcag
gtttaccgttacttcgcctacgactgtgagtcctcgttccccggtgtgtccaccgggccc
atggtcagagtggatgacatcatctgtgacgcacgttactcagacatcgaaccgtccacc
gagggagaggtgatattacgggtgctggatccagccttcaagatcgaggacccctacagc
ccgaggatacagaacatgttgaaaatcactaacctccgggtgaagttcatcaaactccac
actctgggcgacaacctgctcgactcccgcgatgaggtgacggagaagtactactacgcc
ctctacgacatggttgtccgtggaaactgcttctgctacggtcacgcctctgagtgcgcc
ccaatcgatggagccccaataggagctgagggcatggtccatggccgctgtgtgtgtaac
cacaacactgagggactgaactgtgagcgctgccaagacttttaccatgatttaccctgg
agacctgcagaggggcgaaacacccatgcctgcaagaggtgcgagtgtaaccatcactcc
acctcgtgtcacttcgacttggccatgtacatgacgaccggcaacgtgagtgggggcgtg
tgcgacgactgtcaacacaacacggtgggccgacagtgcgagcagtgcgcgcctttcttc
tatcagcaccccaacagagacctgagggaccctaacgtctgtgaaccgtgtaactgtgac
ccggccgggtctctgcagggcggactgtgcgactcacgaactgatgtggcggctgggctg
atctcaggccagtgtcggtgcaaagcctatgtggagggcgagcgctgcgaccactgcaga
cagggacactatgggctgggacaggggcctcagggctgcctgccttgtacctgtaacctg
ctggggactctgccgggaggaaactcctgcgattcaatctcaggaaggtgcttctgcaaa
cggctcgtcgacggacacaactgcgatcagtgtctgccgcagcactggggtctgtccaat
gacatggacggctgcagaccatgtgactgtgaccagggtggggctgttaacaataactgt
gaccctcactctgggcagtgtgtgtgcagggagcacatgttcggacggcgctgcgatcag
gtcgagtccggcttctacttcatcgctctggatcactacacctatgaggccgaggacgcc
aagcacggacccggtgtgacggtggtgcaaaggccttatcctcaggatcgtagtcccacg
tggaccggtatgggtttcgttaatgtgccagaaggagcctacttagagttcaacatcaac
aacatcccagagtccatggactatgacatcctgattcgctatgaaccacagctgccagag
cagtgggagcaggtgaacgttagggtgcagcgtcctgtctacacccctccagccttctcc
ggtcactgcagcaactccatccagagtggagacgagcagtccatctctcttccacctgga
tccagacacgtgctgctggtgaggccggtgtgttttgagaaaggcctgaactacacggtc
cgtctcagtctgccgctctattcgtccttcagcgacgtccagagcccatacacactcatc
gactccttggtgctgatgccccgggtcgtcgagctggacatgttcaatggggtcgatggt
gaaggagcgtgggatacattccagcgctaccgatgtctggagagcagccagagcgtcgtc
aaaagccccatgaccgacatctgcaacgactacatcttcagtgtgtctgctctgctgcac
aaaggagccatggcatgccagtgtgaccctcagggttcgctcagtggtgtgtgcgaggcc
agcggaggtcagtgtcggtgtcgacacaacgttgtcggcaggaactgtgaccattgtgcc
ccggctacgttcctgttcagccccgccggctgcagaccttgtgactgtgaccttcggggc
tcggtcagcgccttctgccacgaggcgaccggccagtgtaactgcgtctccggggcctcg
ggtcgtcagtgttcccactgcctaccgggcttctggggcttccctcagtgccgaccctgc
cactgtaacggccacagcgagtactgccaccctcagaccggagagtgtcagggctgcaga
gacttcaccaccggacacaactgtgagaggtgtttggctggttaccatggtaacccggag
ctgggttcaggtagccactgtcgcccctgtatgtgccctgacggaccccgcagtggacgc
cagtttgctgacagctgttacctgctggattactctaaccagctggtgtgtgtgtgcagc
ccgggctacaaaggtgccaggtgtgacgagtgtgcccccggttactttgggaaccctctg
gtgcccggtggccgctgcttgccctgccagtgtaacaacaacattgacatgcacgaccca
gggtcctgcgacgcccgcacaggtgcctgtctcaaatgcctgcaccacaccgagggctac
gggtgccagcactgcaaaccaggttactacggcagggctgccacacagagctgcaggaag
tgcatgtgttactctgtgggcacggtatctcgggtctgctcctcccccgacgagtgtcag
tgtgatcagctcactggtcagtgtccctgccaaccaaacgtggttggtcagaactgcgac
cgctgcgcccccgacacgtggaacattgccagcggaacgggctgccagcactgcgactgc
gaccccgtccactcctttggctcctcctgcgacgaggtcacaggacagtgttcgtgcaaa
cctggttttggtggcaggacgtgtcgagagtgccgagagcttttctgggggaatccagag
gttaaatgtcacgcttgcgactgcgaccctcggggantttccagccagcagtgccaccgc
gccacaggccagtgcacctgcgtggagggcgtctccggccaacgctgcgacaagtgcgcc
aggggctaccagggggagttccccgtctgcaaaccctgccaccagtgcttcgccatctgg
gacacggtggtcggcgagctgaccaatcagacccgacgtctggagacccaagtgacggag
ctccagaccagcggggtgacggcgccgtacaaggagctgatcggcagcctggagagaaac
gtcaaggccgtgagagagatagtggagagcaaccctgcagcagtgaagctggagcagata
caggagctgatgcaccagatcattggtttgatgtcctacctaaacggaaagctgaacacg
acagaggagacattgaaccagctccacgatgacgccaacgccaccgatgtcaacttggac
gcactgatggatgaggccaaccagctggagctgagggtccaggaggtgagacagcaggtg
tacgatgccaagaacgccaacatccagggtgccatggacaccattgcatcagcacacatg
aagtctacaatggcggagatcaaggccaacgcctccaccactgatccagggaacacagtg
gagcagtctgccacagtacggaaagccactgaggacaaactgagcagcggtcagaaggag
ttcgaccgcaagcaccagaggaacacgcagaagctggacaaactgtccaacgagctggat
aactttgacctgtcacctctgagcgagaagacgtgcggtggtgcagccgaaggcgacgcc
tgctctagctcgtcctgcggcgggctgggctgcgtcggcgaagacggagctcctctgtgt
ggaggagaaggatgcgaaggcctcgtcaccacctcccagactgctctcaaatcagccaag
gatctggaccaggagatcctagctgctatgcaggaggtggacaagctctccaggatggtg
tgggaagccagcatccgcgcgaatgaagccaaggcgaacgctcaggaggtgctggtcaaa
tccaaccggagcaaagagagggtggagcagagcaacgagcagctccgcaacctcatcaaa
gagatacgagacctcctcaccaatgacaaggcagatgtttcagtgatcgagaaggtggcc
aatgaggtgctggcgctggagatgccgacctcgtctgagaagctgcaggagctgacgaag
gagatcagggagaaggtcagcactctgaccagcgtggagaccatcctgaaccagagtgcc
gaggacatccaggctgccgagacgctgctgaaggaggccaaggccgccagcgagcaggcg
tctaacatgaagcagacagcagacgtagtgaaggcagctctggatgagactgagcgtgct
cagagcatcgccatggacgccatcaagctggcccagaacaacactaaaggcactttggac
ctggtgatctctgtggagtcggagacggccaagtcagagctgaagctcggtaacaccacg
ggtcgtctggttcagctggagagggaggtaggcctactgagacagaacaacctggaggtg
aaccggctggcggagacggccgactggatcaccgaccaggccagaaaggacgcagaggag
gcgcagcaggaatttgacatggaggtgaaagataaattcgaggaggtggaggacctggtg
gaggataaaggggagtcggtgctgcaggcgaggaggagagcagatgaactgcagcaggag
gccaaagagctgcttgcccagagcagcagcaagctgcagagactcggagagttggagcgc
tcctacgaggccaaccagcaaatcctggaggccaaagctgcggagctggccgagctggag
caagctgtccgccgggtcctggaggagatcagtcacaaagtgactctgtacagcacctgt
cagtga
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