Lates calcarifer (barramundi perch): 108897683
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Entry
108897683 CDS
T04895
Symbol
si:ch211-186j3.6
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108897683 (si:ch211-186j3.6)
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Cadherin related
108897683 (si:ch211-186j3.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Shg
EGF
Cadherin_pro
CADH_Y-type_LIR
hEGF
RET_CLD1
Y_Y_Y
Big_9
cEGF
Motif
Other DBs
NCBI-GeneID:
108897683
NCBI-ProteinID:
XP_018552933
UniProt:
A0A4W6G041
LinkDB
All DBs
Position
LG2:complement(17225657..17492275)
Genome browser
AA seq
2966 aa
AA seq
DB search
MRYPVMIWVAFLPFLVSCALGNRTMEQVPFFHGHVFENSSPGSRVNGLSVPLKRLNSQRL
CGTEGSGSAAAHFKLLGDGSENFRVFAHHKRGHILLKTSGVLDREERAEYALGLGLCCGQ
CAGLTREEEEESPIVAEVASIKVDVLDTNDHQPTFPGVDVKLSLDDATALRTAIYTVTAR
DDDSGKNAELIYFTMPKNGSFYAVPKTGDILLVDSILGLGEPIKFKVFARDRGWPPRTSQ
SIAVEISPRQWPMTPSLNPQPGKRKPNSLSKVPARRSRSVMESDNPVFINVSEDAGIGSV
VMNLNPVRFQSATFELVEPDVESSPVSVSRDSGDMVISRRLDRETEPLVEISVKVQDKRG
PEWYLVRVELTVTDVNDNVPEWSMVPAPYLAVVSPDAPAGSLVYKLQAQDGDEGNNGEVE
YFLSDGGDGRFEVDRKSGQVRTTGLPLQRDREYLLTVVAADQLGSRSAPAVVSVVAGARP
PQFTNASFTIAIPENTPEGQPFLVTPAVSFQKKPISYSLLINPSSLFSISAETGEISLTR
PIDYESDQHRYLLLVRASEGLDSMSSAAEVRVVIVDENDCVPEFLQSIYSKDGVPETVTT
ATSLLQVSANDCDSAENAELTYYTLSQDFTISPHGTIFPAGSLDYERPNHLYEFVVMAID
KGEVPRTGTTTVRIRMANVNDEAPEFSQHIYRTFVSEDAGPNTLVATVLAKDPDGDGITY
KITTGNEEGNFVIDSQKGLIRLRSSPPPRLQGVEYVLNVTATDDNASGGPQALSSTAQVI
VGVDDVNNNKPVFEKCQQYRESTSVLENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKDS
TVPAFSIHPDTGVIVTARKFDRERQREYAVTVTATDQAADPLIGICQLNILILDQNDNSP
KFENIRYEYFLREDTMIGTSFLRVAAHDDDFGTNAAITYSMSSEQPEYLRVNPLTGWVYV
NQPISQRTYITREIVATDGGNRSSSVELAVTITNVKNQPPQWEKDSYSVVIPENTVRDTP
IVTIKATSPLGDPRVTYNLEDGMVPETNMPVRFYLTPNREDGSASILVAEPLDYETTRNF
MLRVRAQNVAAVPLAAFTMVYVNVTDVNDNVPFFTSSIYEASVTEGAESGTLVFQVSAND
LDLGLNGKISYSLLEDRSGDHQYFRIDPELGFIYTQTVFDRETKSSYLLEVQSVDGRESA
RPGKHGQPNSDTAYVRVFISDVNDNKPAFAQTSYEVDVDEDADVGFAILTVSANDGDEGG
NAKLRYQITSGNTGGVFDVEPEVGTIFIAQTLDYEQNKRYKLHVLASDGKWEDYTTVTVN
VVNKNDEAPVFTVNEYYGSVTEELDGSPVFVLQVTASDPDKDADQEALRYSLHGQGAESE
FIIDEVTGKIYAQRTLDREERAVWRFVVLATDEGGEGLTGFTDVIINVWDINDNAPVFTC
APSCHGDVAENSVVGTSVMEMTATDLDDSAVGQNAVLSYRIVGSLDATNVEVGGLPTFSE
MFTINPTTGTITVAMGGLDREQVESYLLVVEARDGGGMTGTGTATIQIKDVNDHAPRFTD
HSCLARISENAEPNAEVLELAAEDRDTGENAQLTFSVVSGDQEQKFYMVSHKQEQRGTLR
LKKRLDYERHSEQRFNLTLKVEDLDFSSLLHCVVEVEDYNDHAPVFIPHFLSLAPLPEDI
TVGTSVARLVASDSDSGQNREITYSLFEDSDPEGLFTIDQSGVLSVARPLDRERVPQHHL
VVIATDHGIPPLTGSATVQLPLLDVNDNGPEFEAAYSPVVFENVAGPQVVRLNQTSTLLR
AVDRDSPENGPPFHFTIPSEYRHSNDFYLQDNLNGTATLTALRTFDRERQKEFLIPIIMS
DSGRPAKTVTSTLTVTIGDQNDHAHLAGEKKIFINSHRGRMPTTVLGKVYSPDPDDWDNK
TYVFEGHVPSYFILNKRTGFLIIKENAPPGTYQFQVRVSDGIWPDAVCTVTVHVRELRDE
AIYNSGSLRLADITAKEFIELRGKQRSRYELLVDFLSEMLSVPPDDVNIFSLIDVRERML
DVRFAVHGGPSFLQPEKMHGYLAAHKQKLQSFLQVSVFQVRADECPRSECAGTGGCTSVL
NVRDTPTVVDCGTMSLVSVTVESTAVCSCTGREQSHQPCAAYPRNPCFNGGVCVDTQHGY
RCQCPAQFEGPECQQNKHSFHGNGYAWFPPMMPCFESHVSLEFITDVADGLLLYSGPLAQ
LQAWDHEDFMAIELIDGTPTLKINHGSGTVVLQLPGNVNVADRRWHRLDVRSNSKEVRFT
LDRCSGAAVMEMEGLGSWLTTEDHSSCEVMGVTPNTDRHLNMSQVLQLGGVNEDIPYIYP
QLQHKHFTGCIRNLIVDSKLYDLGSPADSQSSSPGCLTTDSSCVNMGYPSCGHRGRCHGE
WGSFSCQCVPGYTGHQCEEETPEYSFDGHSHVHYQLVSPLPARKTWVQVLVRTRKHSSTI
LNLISKEQSEYLRLEIFQGLLCVFYNLGDGDYNLTLPTYRLDNGEWHEVLLDRHDNEMTL
RLDGGGGQREVTGSRGRSREIVIDPSVVILGNTFPSEINKSFQGCMRDLRLNGRYMPLDS
QPRDGVSQVSVQGLSSGCSSDSCKRNQCSSPFTCVDLWRVHECRCPPGHMIRVNGSKKSC
VYTLCATRPCHRGTCVAQSPSKFTCHCPEGYRGRHCETPLAIYREDVGLSFSSLFAICIC
FMALLVLLLGIFLYTRWRSYKGLKEGVYHVSAHHDGWEDIRENVLNYDEEGGGEEDQNAY
DMAELQKSLQPSPAQSVQYCRSRALHHPPPPPHHHHHHHHLLHQAPPAPPSTQPLDSLSR
TASSTTLPPSVASTSSNATTTTTTTTSLRRDVPPTRLPAQGQARPSQLARRSLSFSSQDL
ARYLCEIIRDADQHPDTGPFDSLQVFSTEGGGSPAGSLSSFSSAGLDGGSGGDGGGEARR
EETLAEWGPRFEKLRALYERAEASDL
NT seq
8901 nt
NT seq
+upstream
nt +downstream
nt
atgagatatccagtcatgatttgggtcgcgtttttaccctttttggtttcgtgcgcactc
gggaacaggaccatggagcaggtgccgttctttcacgggcacgtattcgagaactcgtct
ccgggctcccgggtcaatggactgagcgtcccattgaaacggctcaactcgcagagactg
tgcggtaccgagggatccggctcagcggcagcgcactttaaactcctgggggacgggagc
gagaatttccgtgtctttgcgcaccacaaacgggggcatattttactgaagacttctggc
gttctggaccgagaggagcgcgctgaatacgcactgggtctgggtttgtgctgcggccaa
tgcgcgggactgaccagggaagaggaagaggagtctccgatagtagctgaggtggcgtcc
atcaaggtggacgtcctggacaccaacgaccaccagcccaccttccccggtgtcgatgtt
aaactgagcctggatgatgccactgcgctccgcacggcgatctacacggtcaccgcgcgg
gacgacgacagcggcaagaacgcggagctcatctacttcaccatgcccaaaaacgggagt
ttctatgcggtgcccaaaactggcgacattctcttggtggactccatcctcggtctgggc
gagccgattaagtttaaagtgtttgcccgggaccgcgggtggccacctcgcacgagtcag
agcatagcggtggagatcagtccaaggcaatggcccatgacgccctcgcttaacccccaa
ccggggaaacggaaacccaactcgttaagtaaagtaccggcgcgaaggtccaggtcagta
atggaatcggacaaccccgttttcatcaacgtgtcagaggatgcagggatcggatcagtg
gtgatgaacctgaacccggtgaggtttcagtcggccacgtttgagctggtagagcccgac
gtggagagctcaccggtcagcgtgagccgggacagcggggatatggtcatatcacggaga
ctggaccgagagactgagcctttggtggagatcagcgtcaaagttcaggataaaagaggt
ccagagtggtacttggtcagagtggagttgactgtgacagatgtaaatgacaatgtacca
gaatggagcatggttcctgctccctacctcgccgtggtttcacctgacgcccctgcaggc
tcactggtctacaagctccaagctcaggacggggatgagggcaacaatggtgaagtggag
tacttcctgtctgatggtggtgatggtcgttttgaagtagacagaaagagcggccaggtg
cgaaccacaggccttcccttgcagcgggacagggagtacctgctgacagtggtggccgcc
gaccagctgggcagccgcagcgcccccgccgtggtctctgtggtggctggagcccggccg
ccacagttcacgaacgcttccttcaccattgccatacctgaaaacacccctgaaggacag
cccttcctggtcacacctgctgtgtctttccagaagaaaccaatcagctacagcctcctc
atcaatcccagcagcctcttctccatctcagcggagacgggtgaaatcagcctgacccgc
cccatcgactacgagagcgaccagcatcgctacttgctgctggtgcgagccagcgagggc
ctggacagcatgagcagcgcagcagaggtacgagttgttattgtcgatgagaacgactgt
gtcccagagttcctccagtccatttacagcaaagacggtgtaccagagactgtgacaaca
gcaacctccctgctgcaagtgtcagcaaatgactgcgactcagcggagaatgcagagttg
acttattacaccctgagtcaggactttaccatttcccctcacgggaccatcttccctgcg
gggtctctggactacgagaggcccaaccatctgtacgagtttgttgtgatggccattgac
aagggggaggtccctcggacaggcacaactacagtacggatacgaatggctaacgtcaac
gatgaggcacctgagttctcccaacatatatatcggacattcgtttcggaggatgcaggc
cccaacactcttgttgccacggtactggcaaaggatcctgatggggacgggattacatat
aagatcactacaggaaacgaggagggcaacttcgtcatcgacagccagaaaggtttgatc
cgtttgcgctccagcccacctcctcgcctccagggtgttgaatatgtcctcaatgttaca
gcgacggatgacaatgcctcaggcggacctcaggctttgtcatccacggcccaggtcata
gtgggagtggacgacgtgaataacaacaagcctgtctttgagaagtgtcagcagtacaga
gagagcacgtcggtcctggagaaccagccagcggggacgttcgttctgcaggttcatgct
gtggatgccgatgagggctccaatggaagggtcacatacggcttcatgcacaaagactcc
actgtgcccgcattcagtatacaccctgacactggagtaattgtgacagccaggaaattt
gaccgcgaacgccagcgggagtatgcggtgacagtgaccgccactgaccaggcagctgac
ccactgattggcatttgtcagctcaacatcctcatcctggaccagaacgacaacagtccc
aagtttgagaacattcgatatgagtacttccttcgtgaggataccatgattgggactagt
ttcttgcgagtggcagctcatgatgatgactttggtaccaatgcagccatcacgtactct
atgtccagcgaacagccggagtacctcagagtcaaccccctgacaggctgggtgtatgtc
aaccagcccatctctcagaggacctatatcaccagggaaatcgtggctacagacgggggg
aacaggagcagttcggtggagctggccgtcaccatcaccaatgtgaagaatcagcctccg
cagtgggagaaggacagctacagcgtggtcataccggaaaacactgtccgagacacaccc
attgtgaccatcaaagccacctcccctcttggggatcccagggtgacttacaatttagag
gatggaatggtcccggagaccaacatgccggttcgcttctacttgacccccaaccgagag
gacggttccgcctccatcctggtggcagagcccctggactacgagaccaccagaaacttc
atgctgagggttcgagctcagaacgtcgctgctgtaccgctggcagccttcaccatggtc
tacgtcaatgtcacagatgtaaacgacaatgtcccatttttcacgtcctccatctacgag
gcctcggtcactgaaggggcagaatcaggaactttggttttccaggtttcagccaatgac
ctagacttgggtctcaatggcaagatctcctactccctgctggaggatcgcagtggggat
catcagtatttccgaattgacccagagctaggattcatctacacacagactgtgtttgac
cgtgagaccaaaagctcctaccttttggaggttcagtctgtggatggccgggagtcagca
cggcctggcaaacatggacagcccaactctgacacggcatatgttcgcgtttttatcagt
gatgtgaacgataacaagccagcatttgctcaaacatcctatgaagttgatgtggatgaa
gatgctgacgtaggctttgccattctcactgtcagtgccaatgatggggatgaaggtgga
aacgctaagctgcgctaccagatcacttcagggaacacaggaggggtttttgatgtggaa
ccagaggtgggcaccatctttatcgcccagactctggactatgaacagaacaaaaggtac
aagcttcatgtcctggcttcagatgggaagtgggaagattacacaacagtgacggtgaat
gtggttaacaagaatgatgaggctccggtgtttaccgttaacgagtactacggcagtgtg
acagaggagctggatggctcgccagtgtttgtgttacaggtaacagcatctgacccagat
aaggatgccgaccaggaggccttgcgttactctctccatggccagggtgcagagagcgaa
ttcataattgatgaagtcacaggcaagatctacgcccagcggactctggaccgcgaggag
cgcgccgtgtggcgttttgtcgtcctggccacagacgaaggtggcgaaggtctgactggc
ttcactgacgtgatcatcaatgtgtgggacatcaatgacaatgcgcctgtcttcacctgc
gcccccagctgccatggagacgtggcggagaactctgtagtggggacgtcagtgatggag
atgacagccactgacctggacgactcagctgtggggcagaatgctgtgctctcttacagg
attgtgggtagtttagacgccactaatgtcgaagtaggagggttgcctactttctcagaa
atgttcaccatcaaccccaccacagggacaatcactgtagccatgggcggcctggacaga
gagcaggttgagtcctacctcctggttgtggaggccagggatgggggaggaatgacaggc
actggaactgccactattcagatcaaggatgtgaacgaccatgctccaaggttcactgat
cattcctgcctggcaaggatctctgagaatgcagagcccaatgcagaggtattggagctt
gctgcagaggacagagacactggagaaaatgcccagctcacctttagtgttgtgtccggc
gaccaagagcagaagttctacatggtcagccacaagcaggagcagcgtggcaccctgagg
cttaagaaacgtctggactatgaacgtcacagtgagcagaggttcaatctcacactgaag
gttgaagaccttgacttttcaagtctcctgcactgtgtagtggaggtggaggattataac
gaccatgctcctgtcttcattccacacttcctgtctctcgccccgctacctgaggacatc
accgtgggaactagtgtggcacgtttggtggccagcgactccgattcaggccagaaccgt
gagatcacctacagcctatttgaggactcagatcctgaggggctgttcaccatcgaccag
tctggtgtactatctgtggcccggcctctggatcgggagagggtaccccagcatcacttg
gttgtcatagcaaccgatcatgggattccacctttaacaggcagtgccacagtccagctg
cctctgttggatgtgaatgataatggaccagagtttgaggcagcatactccccagtagta
tttgagaatgtggctggaccacaggtagtaaggttgaaccaaacatcgaccctcctccga
gctgtggaccgggactctcccgaaaatggcccgccctttcacttcaccatcccctcagag
tatcgccacagcaatgatttctacctccaggacaacctgaatggcactgcgacactaaca
gctctcaggacgtttgaccgcgagcgccagaaagaattcctcattcctattatcatgagc
gacagcggccgtccagccaaaacagtgaccagcaccctgacagtgaccatcggtgaccaa
aatgatcacgcacacttggcaggggaaaagaaaattttcatcaatagtcaccgaggccgt
atgcccaccacagtgcttggaaaagtctactctcctgacccagatgactgggacaacaag
acatacgtctttgaaggacatgtgccaagttacttcatcctgaacaaacgaacaggtttc
ttgatcatcaaggagaacgccccacctggcacgtatcagttccaggtccgtgtgtctgat
ggaatttggccggatgctgtctgcactgtcaccgtgcacgtcagagagctgcgagacgag
gccatctacaactcagggtcccttcgtctggcagacatcacagcaaaggagttcattgaa
ctgagagggaagcagcggagccgctacgagctgctggtggacttcctgtctgagatgctc
tctgttccacctgatgatgtcaacatctttagcctaatagatgtgagagagcgaatgctg
gatgttcgctttgctgtacacggtggcccatccttcctccagcctgagaaaatgcacggt
tatctggctgcccacaaacaaaagctccagtcattcctgcaggtcagcgtgttccaagtg
cgggcagacgagtgtcccaggtcagagtgtgccgggaccggaggctgcactagcgttttg
aatgtgcgagacacacccacagtggtggattgtgggactatgagtcttgtatctgtgaca
gtggaatccacagctgtgtgctcttgcacaggtagagagcaatcccatcaaccctgtgct
gcatatcccagaaacccctgcttcaatggtggagtgtgtgtggacactcagcatggctac
aggtgccaatgcccagctcagtttgaggggcctgagtgccagcagaacaagcacagtttc
catggcaacggctatgcctggtttcctcccatgatgccttgtttcgagagtcacgtgtcg
ctggagttcatcacagatgtggctgatggattgttgctgtacagcggccccttagcccag
ctgcaggcctgggaccacgaggacttcatggccatagagctaatagatgggacccccacc
ttgaaaatcaaccatggctctggcacagtggtgctacagttgccaggcaacgtgaacgtg
gcagacaggcgctggcatcggctggatgtccgcagcaacagcaaggaagtgcgtttcacc
ctagatcgctgttcgggggcagcagtgatggaaatggagggtctgggcagctggttgacc
accgaggaccactcctcctgtgaagttatgggtgttacacccaacactgacagacacctg
aacatgagccaggtgctgcagcttggtggtgtgaatgaggacatcccctacatctacccg
cagcttcagcataaacacttcactggctgcatccgcaacctcatcgttgacagcaagctg
tatgatttgggctccccggctgactcacagtccagctctccaggctgcctgaccaccgat
agcagctgtgtcaacatgggctatccgtcctgcggccaccggggtcgctgtcacggcgag
tggggctccttcagctgccagtgtgtgcccggttacacaggacaccagtgtgaagaggag
accccagagtactcctttgatgggcacagtcacgtgcattaccagttggtgtccccgctg
ccggcccggaagacttgggttcaggtcctggttcgaacccgcaaacacagcagcaccatc
ctcaatctgatctcgaaggagcagagtgaatatctacgactagagatcttccagggtctt
ctctgtgttttctacaacctcggtgacggggactacaacctaaccctgcccacctatcgc
cttgacaatggggaatggcatgaggtcctcctggatcggcatgacaacgagatgacgctg
cgactggatggtggaggagggcagcgagaggtcacaggatcgaggggccgaagccgagaa
atcgtaattgatcccagtgtggtaatcctaggaaataccttcccatctgaaatcaacaaa
agcttccagggctgcatgcgggacctacgcctcaacggtcgctatatgccacttgacagc
cagccgcgagatggggtttctcaggtcagcgtacaaggcctctcctctgggtgctcatct
gactcgtgcaaaaggaaccagtgtagctccccattcacctgtgttgacttgtggagagtg
cacgaatgcagatgtcctcctggccatatgatccgtgtgaacgggtccaaaaagtcctgt
gtctacactctctgtgctacacggccgtgtcaccggggaacctgcgtggcccagtcaccc
tccaaattcacctgccactgtccagagggttacagaggacgccactgcgagacaccactg
gccatatacagggaggatgtgggcctgagcttcagctccctcttcgccatctgcatctgc
tttatggccttactagtgctgctgttgggcattttcctctacactcgctggaggagctac
aaagggctgaaggagggcgtttaccacgtctcagcccatcacgatgggtgggaggacatc
cgagagaacgtcctcaactatgacgaagagggaggcggggaggaggatcagaatgcctac
gacatggccgagctgcagaagtccctccagccgagcccggcccagtcggtccagtactgc
cgctccagagccctgcaccaccctcctcctcctccccaccaccaccaccaccaccaccac
ctgctacaccaggcaccccctgccccgccgtccacccagccgctggactccctcagccgg
acggccagctccaccaccctgcccccgtcggtagcctccacctcctccaatgccaccacc
accaccaccaccaccaccagcctccgcagggacgtccccccgaccagactcccggcccag
ggccaggcccggccctcccagctggcgcgccgctccttgtccttctccagccaggacctg
gcccgctacctgtgcgagatcatccgcgatgccgatcagcatccggacacggggcctttc
gactccctgcaggtcttctccaccgagggagggggctcgcccgccgggtccctcagctcc
ttcagctcggcggggctggacggggggagcggcggagacgggggaggggaggcgaggagg
gaggagacgcttgcggagtgggggcctcgctttgagaagctgcgggccctgtatgagcga
gcagaggccagcgacctctga
DBGET
integrated database retrieval system
