Lates calcarifer (barramundi perch): 108897696
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Entry
108897696 CDS
T04895
Name
(RefSeq) leucine-rich repeat-containing protein 49 isoform X1
KO
K16606
leucine-rich repeat-containing protein 49
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108897696
04812 Cytoskeleton proteins [BR:
lcf04812
]
108897696
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Tubulin polyglutamylase and associated proteins
108897696
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Tubulin modification proteins
Tubulin polyglutamylase complex components
108897696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_9
LRR_4
LRR_8
LRR_14
LRR_LRWD1
LRR_NXF1-5
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
108897696
NCBI-ProteinID:
XP_018552952
UniProt:
A0A4W6G7M6
LinkDB
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Position
LG2:20316864..20351519
Genome browser
AA seq
693 aa
AA seq
DB search
MLGKKQETNLRGRTHSAEASYYRNVSNLSKPAGGSGGYNYITVPGFPFTRLPCDSFASNF
QRIDLDRRCLEECPQLGIMEELQLLNLQHNRITRIQHLSHLKQLVFLNLHDNHISEMTGI
EALSSLRILMLGKNRIQKVCCLGGLSKLNILDLHDNQICRMENMSHLSELRVLNLAGNSI
SEVENLQGLDCLTELNLRRNCISFVTEVDRLPCLQRLFLSCNNITSFDQLACLGESRSLS
ELTLDGNPVALETWYKQAVLRCVLHLRQLDMKRITDEDRRMAGVQARKEEEKKRESHKQT
IHKEKRRLAIRNAAQQWEGVRACLELPPTNGAKEEVSPENSPAHSPAQTNGLTQEPSPDE
PRRVSPGSGPERPSGGTESRLRTNSRPNSPRDPKLVEAGSGSVQSLSLSDSHLAELDGDT
LRLFGLGALEALERGWGVQTAGAVTVITFRYISFDAIVPTLPRIRVKFPNLSHLIFLETN
ISRLPQLAALAQVRRLDQLTIHPEGNPVVSLALWRSFIIYRLHHFNLQRINGQEVTMNDV
IAAERIFGTLGHIAATETPRCRLLLLLEESRKRQLQFLLEGRGRRAGLSPEELRDNGKLL
GEGLSRALFNYPSRDCSAESPEEGTVESSERDAMIEQYLQQLVQRASDTNLKGEALHKLW
PSMFAEMVRDCVLEMRDRAAFRQASLAKLSETK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcaagaagcaagagacaaatctaagaggccgaacccacagtgcagaggcctct
tactaccgaaatgtctcaaacctttccaagccagcaggtggttctggaggatataattac
atcactgttcctggctttcccttcactcggttgccttgtgacagttttgcatccaatttt
caacgaattgacttggacaggcgctgtctggaggaatgcccgcagcttggcattatggaa
gaactgcaacttctcaacctccagcacaatcgaatcacaagaatccagcacttgtcacat
ctgaaacagcttgttttcctgaacttgcatgacaaccacatctctgaaatgactggcatt
gaagctctaagctcacttaggatccttatgctggggaagaacagaatccagaaggtatgt
tgcctgggaggcctgtccaaactgaatatcctggatttacatgacaatcagatctgcagg
atggaaaacatgtctcacctgagcgagctgcgagtgttgaacctggcaggaaacagcatc
tccgaagtagaaaatctgcagggcctggactgtttgactgaactcaacctaagacgcaac
tgcatctcttttgtgactgaggtggaccgcctgccctgcttgcagcgtctctttctcagc
tgcaacaacatcaccagttttgatcagctagcctgccttggagagtcacgctccctttct
gagctcaccctggatgggaatcctgtagccctggagacatggtacaagcaggccgtcctg
cgctgtgtgcttcatctgagacagctggacatgaagcgcatcacagacgaggatcggcgc
atggctggtgtacaagctcgaaaagaggaggagaagaagagggagagtcacaagcagacc
attcataaggagaagcggcgtctggcgatccgtaatgcagcgcagcagtgggagggtgtc
agggcctgtctggagctgccaccaacaaatggtgcaaaagaagaagtcagtccagagaac
agtcccgcccacagccctgctcagaccaatggcctcacacaggagccttctccagacgag
ccaagacgggtaagccctggttcaggaccagagcgaccatcagggggaacggagagcaga
ctccgcaccaacagccgtcctaacagcccacgagatcccaagcttgtggaggcagggagc
ggcagtgttcagagcttgtccctgtctgacagtcacctggcggagctggatggagacacc
ctgcgtttatttggactcggagccctggaggccctagagaggggttggggagttcagacc
gctggtgctgtcactgtaataactttccgttacatcagctttgacgctattgtaccaaca
ctgccaagaataagggtcaagttccccaatctatcgcacttgatcttcttggaaaccaac
atcagccgtctgccgcagctggcggccctggctcaggtgaggcgtctggaccagctgacc
atccacccagagggcaaccctgtggtcagtctggctctgtggcgctccttcatcatctac
cgcctgcaccacttcaacctgcagaggatcaatggccaggaggtgaccatgaatgatgtg
attgctgcagagcgcatatttggaacactgggtcatatagcagccaccgaaacgccacgt
tgccggctcctgctgctgctagaggagtccaggaagcgtcagctgcagttcctgttggag
gggcgtggccggcgggcagggctgagtccggaggagctgcgagacaacgggaagctcctg
ggagaaggcttgagtagagcactgttcaactacccaagcagagactgcagtgcagagagc
cctgaagagggtactgtggagtcatctgagcgtgatgccatgatagaacagtacctccag
cagttggtccaacgggcatcagacaccaatctgaagggtgaggctcttcacaagctctgg
ccctccatgtttgcagagatggtgagagactgtgtgttggagatgagggaccgagcggcc
ttccgccaagccagccttgcaaagctctccgagaccaagtga
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