Lates calcarifer (barramundi perch): 108897751
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Entry
108897751 CDS
T04895
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4 isoform X1
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108897751
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108897751
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
108897751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
ADAMTS_CR_3
TSP1_spondin
TSP1_CCN
PLAC
Motif
Other DBs
NCBI-GeneID:
108897751
NCBI-ProteinID:
XP_018553031
UniProt:
A0A4W6G6G8
LinkDB
All DBs
Position
LG2:20356752..20397545
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AA seq
970 aa
AA seq
DB search
MQGACVWIVRVFALLLLLWSDLLDCQHTTDHRKVPQRAEHQQEFRAEHGEIQGSWGAWGS
WSTCSRTCERGVQEQSRPCLPIYTPSQYPSRRAGSHPQQPGHVISALQPTVPLHRNTGRP
SNSSSRGELRKETQPGARRRISHIIPGRYGYGRAPHVAPSQTDKGHGSGMARPQRQRRSS
VTDAHHLTARGHGDHRSNNLDPSNNLHRYSRPYIQPSAQQPKNKQVWAPLYQPGSANQPE
EQEPQSGSQTSGPQQHQERPYNPLPTSFCTGEHARYRICNSNACPPSSRPIRAVQCSSYN
NQPFMGRLYEWEPFNEVPGDQHCELNCRAIGFRFYVRQSDRVIDGTPCGQNDTSLCVAGK
CTSLGCDEYLGSGKVMDKCGVCGGDNTTCRLVSGVFKHSLTKIGYHKIVEIPEGATKINV
TEMVKSRNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYRRPNEISSTAGESFLAEG
PTNEILDVYMIFQQPNPGVHYEYILPSEKSVGPQQPNHRPEGNAVNGQGEYDHHSNTHQE
NYNPAGGGRYPPRLPDNQVPAVQPPRREREYNWKMTGFTECSASCGKGFRYSVFHCVHRL
NHVQVSDALCDSSSKPSPQEEACNLQPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYA
NRTLNVHTSRCRHLERPETASTCQLKICSEWQIRSDWTTCSVPCGLGQRSREVRCVSNVG
DFVPDEECNMNLRPVDVENCDMGACAKSWFYTDWGNRCSAECGMGVRTRGVLCLTNHISS
LPLEGCGSERPADSQVCNNGPCENRIEWFTGPWSQCSAECGAGSQQRSVVCLMKSDEGFT
VMPPYECSSLERPLSQQSCNLKACGAKWYHTDWSACSKTCEGGFRVREVRCLSDDMLSSE
GCDELLRPAEKEDCNPEPCIPRIDENCRDKYFNCNVVVQARLCVYDYYKTTCCASCSRVA
HRQSIHRGHS
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggagcctgtgtctggattgtcagagtttttgcgctgctgctgttgctttggtca
gacctcctggactgccagcacacaacagaccacaggaaggttcctcagagggcagagcac
caacaggagttcagggcagagcatggagaaattcaaggctcttggggcgcctgggggtcc
tggtcaacctgctcccggacctgtgaaagaggggtacaagagcagagcaggccctgcctg
cccatttacactccatcccagtacccctcgagaagagctggaagtcatccccagcaacca
ggtcatgtcatctcggccctgcagccaacagttcctctgcaccgcaacacaggcaggcct
tccaacagcagcagtcgtggagagctgaggaaggagacccaaccaggtgcacgaaggagg
atcagtcacatcattccggggaggtatggctacgggagagctcctcacgttgctccgtcg
cagacggacaaaggccatggatctgggatggctcgcccccagagacagagacggtcttct
gtgactgatgcccaccatctcaccgctagaggccacggtgaccataggtctaacaacctg
gacccctcaaacaacctccatcgctacagcagaccctacatacagccaagtgcacagcag
cccaaaaataagcaagtctgggctcccctctaccaacctggttcagccaaccagcctgag
gagcaggaaccacaatcaggcagccagacctctgggccccagcaacaccaggagagaccc
tataaccccttacctacttctttctgtacaggggagcatgctcgctacaggatctgcaac
agtaatgcctgtcctccatccagcagacccatcagggctgttcagtgttcctcttacaac
aaccaacctttcatgggcagattgtatgaatgggaacctttcaatgaggttccaggggat
cagcattgtgaactcaactgccgggccatagggttcaggttctatgtgcggcagtcggac
agggtgattgatgggacgccatgtggacagaatgatacctctctctgtgtggcaggaaag
tgtacgagtctaggctgcgatgagtatctcggatcaggaaaggtgatggacaagtgcggc
gtgtgtggaggtgacaacacaacctgcaggctggtctccggagtcttcaaacacagtctg
accaaaattggttatcacaagatagtggagatcccagagggagccaccaagatcaacgtc
acagagatggtgaagagccggaactacctagctctccgaagccgatcggggcgatccatc
attaatggaaactgggccattgaccgaccagggaagtacgaaggaggggggaccatgttc
acctaccgccgacccaatgaaatcagtagcactgctggggagtcctttcttgctgaaggg
cccaccaatgagatcctggatgtttatatgatcttccagcagccaaaccctggtgttcat
tatgagtacattcttccctctgagaaatcagttggccctcaacaaccaaaccacagacca
gaagggaacgctgtgaatggacagggtgaatacgaccatcacagcaacactcaccaagaa
aactacaatccagcaggtggagggaggtaccctcctcgtctcccggacaaccaggtaccc
gctgtacaaccacccagacgtgagcgagagtacaactggaaaatgacaggttttacggag
tgcagtgcctcctgtggtaaaggattcagatactccgtctttcactgtgtccaccggctg
aatcatgtccaggtatctgatgctctatgtgacagcagcagcaagccgagtccacaggag
gaggcctgcaacctgcagccctgcccagcattttgggatattggagagtggtcagaatgc
agcaagacctgtggcctgggcatgcagcaccgtcaggtcctgtgtcgccaggtttacgcc
aaccgcaccctcaatgtccacacgagccgctgccgacacctggagcggcccgaaactgcc
agcacctgccagctgaagatctgcagtgagtggcagatccgctccgactggaccacttgc
tctgtgccatgtgggctgggtcagaggtcgcgagaggtacgctgtgtcagcaacgtgggc
gactttgttcctgacgaggagtgcaacatgaatctgcggcccgtcgatgtagagaactgt
gatatgggagcctgtgccaagagctggttttacactgactggggcaataggtgttctgct
gaatgtgggatgggtgtacggaccaggggagtcctctgcctgaccaaccacatcagcagc
cttcctctggaggggtgcggcagcgagcggcctgcagattctcaggtctgcaacaacggc
ccctgtgagaaccgcatagagtggttcacaggcccctggagccagtgctctgcagagtgt
ggcgcaggcagccagcagagatcagtggtctgtctgatgaagtcagatgaaggattcact
gtcatgccaccgtatgagtgctcctccctggagcgacccctcagccagcaaagctgcaac
cttaaggcctgtggagcaaagtggtatcacactgactggagtgcttgttcaaaaacatgt
gagggaggcttccgtgtgcgggaggtgcgctgcctctctgatgacatgctgtccagtgag
ggctgtgacgagctgctgagaccagcagagaaggaggactgtaacccagagccctgcata
ccccgcatagatgagaactgccgggacaagtacttcaactgcaacgtggtggtccaggct
cgcctctgcgtgtatgattactacaagacgacgtgctgtgcttcatgctcacgagtggcc
cacagacagtcgattcatcggggccacagctag
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