Lates calcarifer (barramundi perch): 108897760
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Entry
108897760 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: pumilio homolog 1
KO
K17943
pumilio RNA-binding family
Organism
lcf
Lates calcarifer (barramundi perch)
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Gene cluster
GFIT
Motif
Pfam:
PUF
PUF_NOP9
CFAP61_N
Motif
Other DBs
NCBI-GeneID:
108897760
NCBI-ProteinID:
XP_018553038
UniProt:
A0AAJ7VGT1
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Position
LG3:complement(10502646..10524116)
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AA seq
1163 aa
AA seq
DB search
MSSVCVLKRKAVLWQDSFSPHHRSTSPSMPVVLSSGGHAPPTGQTPQATPPSQQGVAGAG
RSQDDAMVDYFFQRQHGEQPGKHRWPTGDNIHDSQVRSMDELNHDFQALALEGRAMGEQL
LTGKKFWETDDSGKDGPKGIFLDQWRDSAWGASDHSVSQPIMVSRRPGQGFHGGGDVGVG
SVMSPRSESGGLGVSMVEYVLSSSPADKLDSCLRKGPYGQRDGEVEEEKREKPKATFEGE
KLKELTEVEADVISDVINPNGLPVQNGLDVDVKEFGRPPGNMPAPGPEGDLLGGPGGVGA
EGLTPLGGGGGPKPPEDFSGVEQGGVTMDPMESVMEPLQFDYNSQMPMDSAPTVGLFDYT
NQQQLFQRNNALAVQQLTAAQQQQYALAAAQQPHIGLAPAFVPNPYIISAAPPGTDPYAA
GLAAAATLGPAVMPPQYYGVTPWGVYPANLFQQQAAAANSSANQQAAGQGQQNQQQVMRA
GGNQRPLTPSQGQQGQQNDQLVAAAAVNSALAFGQGLAAGVPGYPVLAPAAYYDQTGALV
VNTGARSGPVRLMAPASVIISPSAAQAVAAAAASAGGANGGLGGGANGPFRAMTSQQPQQ
QGGPGGALGGSSFYGSSSLSSSSQSSSLFSQGSAQPGPGSASLGFSQPASSSLGATLGAT
LGGFGTAVANSSGGSGSRRDSLTGNNELYKRTPSSLTPIGHGGFYNGTLGFSPSPGPVGM
PLPNQGPSHSLTPPPSLSNHSSSSNLNLGGLTNGSGRFISAAPGAEAKYRSAASSGSSLF
SPSSQLFPSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLRDIAGHIMEFSQDQHGSRF
IQLKLERASSAERQLVFSEILQAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHV
LSLALQMYGCRVIQKALEFIPSDQQVISEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP
HALHFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGN
YVIQHVLEHGRAEDKSKIVAEIRGNVLGLSQHKFASNVVEKCVTHASRAERAVLIDEVCS
LTEGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHISTLRKYTYGKHILAK
LEKYYMKNGVDLGPLCGPPNGIM
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgtgtgtgtgttgaagaggaaagcagtgctctggcaggattcattcagcccc
caccatagaagtacatctcccagcatgcccgtggtgctgagcagcggaggacatgccccg
ccaactgggcagacccctcaggccacaccccccagccagcagggtgtggcgggtgctgga
cgttcccaggatgatgccatggtagactatttcttccagcggcagcacggcgaacagcct
ggcaaacatcgctggcccactggagacaacatccatgacagccaggtgcggtccatggat
gagctgaaccatgactttcaggctctggctctggagggacgcgccatgggagagcagctg
ctaactggtaagaagttctgggagacagacgactctgggaaggatggaccaaaagggatc
ttcctggaccagtggagagacagtgcatggggcgcctcagatcactcggtgtctcagcca
atcatggtgtcccgtcggccgggacagggtttccacggcggaggtgacgttggggtgggc
tcagtgatgtccccgcggtctgagagtggagggttgggagttagcatggtggagtacgtc
ctctcctcctcgccagctgacaaactggattcctgcctccgaaaaggaccctatgggcag
agggatggagaggtggaggaggagaagagggagaagccaaaggcaacgtttgagggagag
aaactgaaagagttgacagaagttgaagctgatgtcatcagcgacgtcattaaccccaat
gggctgcctgtgcagaacggcctcgacgtggatgtcaaagagtttggtcgtcccccaggc
aacatgccggcccctgggccagagggtgacttgcttgggggtcccgggggtgtgggggct
gagggcctgacacccctgggaggtggtggggggccaaagccccctgaggacttctctggt
gtagaacaaggtggtgtcaccatggaccccatggagtcagtgatggagcctcttcagttc
gactacaactcccagatgcccatggactctgcgcccactgtgggtctgtttgattacact
aaccagcagcagctgtttcagagaaacaatgccctagcagtgcagcagttaacagcagcc
cagcagcagcagtacgccttggcagcagcacagcagcctcacattggtctggcgccagca
tttgtgcccaatccttacatcatcagtgctgcaccacctgggacagacccttacgcagcc
ggtctcgcagcagcagccacgctcggtccggcagtgatgcctccccagtactatggtgtg
acaccctggggggtttaccctgccaaccttttccagcagcaagctgctgcagccaacagc
tcagccaatcagcaggcagcaggccagggccagcagaaccaacagcaggtgatgcgtgct
gggggcaaccagcgacctctgacccccagccaaggtcagcagggtcagcagaatgaccag
ctggttgcagcagcagcagtcaactcagcccttgccttcggtcaggggttagcagcagga
gtccccgggtacccagtcttggccccagcagcctactatgaccagacaggagccctggtg
gtcaacactggagctaggagtggccctgtccgcctcatggcccctgcctctgtcatcata
tctccttccgcagcacaagcagttgcagcagcagcagcatctgcaggtggtgccaacggc
ggtcttggtggcggggccaacggtccgttccgtgccatgacgtcccagcagcctcagcag
caggggggccctggtggcgctctgggagggagctccttctacggttcctcctccctcagc
tcctcctcccagagctcgtcccttttctcacaaggctctgcccagcccggaccggggtct
gcctccttgggcttcagccagcctgcctcttcctcccttggtgccactctgggggccacg
ctgggaggcttcggcactgcagtggccaactcaagtggtggcagtgggtccagacgggac
tccctgacaggcaacaatgagctgtacaaacgcacgccctccagcctcaccccgattggc
cacgggggcttctataatggcaccttgggcttcagtccttcccctggccccgtgggcatg
cctctgcccaaccagggcccctcccactccctcacacccccaccctccctgtccaatcac
agctcctcgtccaacctcaatcttggaggcctgaccaatggcagtgggcgtttcatctcc
gctgcccctggagcggaagccaagtaccgcagcgccgccagctcaggctcctccctcttc
tcacccagcagccagctgttcccgtcgtcacgactacgctacggcatgtcggatgtgatg
ccgtcgggccggagccgcctgctggaggacttcaggaacaaccgctaccccaacctgcag
ctccgagacatcgccggccacatcatggagttcagccaggaccagcacgggagcaggttt
atccagttgaaattggagcgagccagttcagcagagcgccagcttgtcttcagtgagata
ctgcaggcggcctaccagcttatggtggacgtctttggaaattacgtcatccagaagttc
tttgagtttggcagcctggaccagaagctggctctggcagagaggatccgaggtcatgtg
ttgtctctggccctgcagatgtacggctgcagggtcattcagaaagctctggagttcatc
ccctcggatcagcaggtcattagtgagatggtgcgggagctggatggccatgtgttgaag
tgtgtgaaggaccagaatggtaaccacgtggtgcaaaagtgtatcgagtgtgtccagcct
catgcgctgcacttcatcatagatgcctttaagggacaggtttttgccctctccactcac
ccttacggctgccgagtcatccagcgcattcttgaacactgccttcctgaacagacgctg
cctatactggaggagctccatcaacacacagagcagctagtgcaggaccagtatggcaac
tatgtaatccagcacgttttggaacacggccgagctgaggataagagcaagatagtggcg
gagatcagaggcaatgtactgggactcagccagcacaagtttgctagtaatgtggtggag
aagtgcgtgacccatgcgtcgcgggcagaacgggcggtactgatagatgaagtgtgtagc
ctgactgagggcccccacagtgccttatacaccatgatgaaggatcaatacgccaactac
gtggtgcagaagatgatcgacgtggccgaacccacccagcgcaagatcgtaatgcacaag
atccggccccatatctccaccctgaggaagtatacctatggaaaacacatcctggccaag
ctggagaagtactacatgaagaacggcgttgacctgggtcctctctgcggcccacctaac
ggcatcatgtaa
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