Lates calcarifer (barramundi perch): 108897772
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Entry
108897772 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: CLIP-associating protein 2
KO
K16578
CLIP-associating protein 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108897772
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108897772
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
108897772
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
108897772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
XMAP215_CLASP_TOG
HEAT_EF3_N
CEP104-like_TOG
HEAT
HEAT_EZ
TOR1L1_N
RTP1_C1
Cnd1
ParcG
HEAT_DAAF5
TAN
Motif
Other DBs
NCBI-GeneID:
108897772
NCBI-ProteinID:
XP_050922535
UniProt:
A0AAJ8AYQ0
LinkDB
All DBs
Position
LG3:complement(10631061..10686343)
Genome browser
AA seq
1536 aa
AA seq
DB search
MEEHDNMDYFYQQVLQKDVTRRLQVGQDLIDYLNDPHRSPDVEQDKPRLDKTIDELTGWV
NSSNFKVALMGIDICGAFVDRMGERFKGYLGTVLPALVDRLGDGKDQVRENSQALILRCM
EQTASPMYVWERLLPGFKHKNFRSREGVCLCLSATLNTYGAQPLSLSKLVPHLCSLTGDQ
NPQVREASITTLVDVYRHVGERVRADVGKRGLPAARLQTIFARFDEALNSGNMALSPSHD
RSFEDDDSVDGNRSSSAQAAFKVPKVPKKPAESSAARRPSATGGKLVSKESAGAVDEDDF
IKAFTDVPTVQIYSTRDLEDNLNKIREVCSDDKHDWDQRANALKKIRSLLVAGAANYDCF
YQHLRLLDGAFKLSAKDLRSQVVREACITVAHLSLVLGNKFDHGAEAIVPVLFNLIPNCA
KVMATSWCSAIRIIIRHTHVPRLIPLITSNCTSKSVAVRRRCYDFLDLLLQEWQTHSLER
HTAVLVESIKKGIRDADSEARVEARKAYWGLRNHFPAEADALYNSLESSYQRTLQSCLKS
SGSVASLPQSDRSSSSSQESLNRPLSSKWSAAPGRVPAGSKGGVSAASLQRSRSDVDVNA
AAVAKHRHVGQAGGASRLPPGSYSSLDDASDKTDGTRSDNGRVRTKQVLSTASSVSSQVD
SRGRSRTKMVSQSQRSDESDCTPGSQSATPVGAGSRSGSPGRVLTSTALSTMSSGAHRVL
AGASGDGHRRSRIPRSQGCSRDSSPTRLSVAPSSISSIYNGASRGARGSRIPRPSMSQGC
SREASRESSRDTSPVRSFTPLATRSYSRSTGALHTPDAFGAAGSGFGISQSSRLSSSVSA
MRVLNTGSDVEEALADALLLGDMRSKKKPARRRYENYGMYSDDDANSDASSACSERSYSS
RNGGAIPTYMRQTEDVAEVLNRCASANWSERKEGLLGLQALLKNQRTLSRVELKRLCEIF
TRMFADPHSKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKA
LDVTRESFPNDLQFTILMRFTVDQTQTPNLKVKVAILKYIETLTLQMEAPDFVNSSETRL
AVSRIITWTTEPKSSDVRKAAQSVLIALFQLNTPEFTMLLAALPKTFQDGATKLLQNHLK
NTGNAAQAPMGSPLTRHTPRSPASWSSPVTSPTNTSQNTPSPSAFDYDTENMNSEDIYSS
LKGVTEAIQNFSVRSQEDMNEPVQRREGEEGGSGMDGRVSDLMDGGRMALDNKTSLLNTP
LLSSSPRGAREHFSDSPFKHSRKDTSLDDSEQLTDESSLDQSELVAELLKELSNHNERIE
ERKAALCELLKLIRENTLQVWDEHFKTILLLLLETMGDREHVIRTLALRVLREILSKQPW
RFKNYAELTIMKALEAHKDPHKEVVRAAEETAAMLALSISPDQCIKVLCPIIQSADYPIN
LAAIKMQTKVVERIPREGLISLLPEIVPGLIQGYDNSESSVRKACVFCLVAIHAVIGEDL
KPHLSQLSSSKLKLLNLYIKRAQSGSSGSEPPSEGL
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacatgacaacatggactatttttaccagcaggtactacagaaagacgttacc
cgcaggttgcaggtcggacaggacctcattgactacctaaacgacccgcaccgctccccg
gacgtggaacaggacaaaccccgactggataagaccatagacgagctaaccggatgggtg
aactccagcaatttcaaggtggcgttgatggggatagacatctgcggtgcgtttgtggac
cgcatgggagagcggttcaaaggatacctgggcacagtcttgccagctctggtggaccgg
ctgggtgatgggaaggaccaggttcgggagaacagccaagctcttatccttcgctgcatg
gagcagactgcctcacccatgtacgtttgggaaaggctgcttcctggttttaaacataag
aacttccgcagtcgagaaggagtctgcctctgtctcagtgccacgctcaacacgtatgga
gcccaaccactgagcctcagtaaactagttcctcatctctgctctctgactggagaccag
aacccacaggttcgtgaggcctccataacaacattggtggatgtttatcgtcacgtcgga
gagagggtcagagcagatgtggggaagagaggactgcctgctgcacggttacagacgatc
tttgctcgttttgatgaagccttgaattcaggcaacatggctctcagcccaagtcacgat
cgtagttttgaggatgacgacagtgtggatgggaatcgttcttcctcagcccaggctgct
ttcaaggtcccaaaagttcccaagaagcctgcagagtcctcggctgcacgcagacccagc
gctaccggtggcaagctagtatctaaggaaagtgccggggcagttgatgaagatgatttc
atcaaagccttcacagatgtccctactgtccagatctactcaacaagagatcttgaggac
aacctcaataagatccgtgaggtttgctccgacgacaaacatgactgggaccagagagcc
aacgctctgaaaaagatccgctcactgctcgtggcaggtgcagccaactacgactgtttt
taccagcacctgcggctactagatggagctttcaaactgtcggctaaagacctgcgctca
caagtggttcgagaggcctgcatcactgtggcccacctttcattagtgttggggaataag
tttgaccatggagcggaagccatcgtccctgtcctgtttaacctcatccccaactgtgcc
aaagtcatggccacctcctggtgttccgctatccgcatcatcatacggcacacgcacgtc
cccaggctcatccctctgataaccagtaactgcacatccaagtctgtggctgttagaagg
cgctgttatgatttcttggaccttctgctacaggaatggcaaacccactctctagagaga
cacacagcagttctagttgagagcatcaagaagggaattcgagatgctgactcagaggcc
agagtggaggcccgcaaggcctactggggtttgaggaaccactttccagcagaggccgac
gctctctacaactcgctggagtcgtcatatcagaggacccttcagtcctgcctgaagagc
tccggcagcgtggcctcacttccccagagtgaccgttcctcatcttcctctcaggagagc
ctcaatcggcctctgtcttctaaatggtcagcagctcctgggcgagtccccgcgggttca
aagggtggggtgtcggcggcctccctgcagcgttcccgtagcgacgtggacgtaaacgca
gcagcagtcgctaagcaccggcacgtcggacaggctgggggagcaagccgactgcccccc
ggctcctactcctcactggatgatgcctctgataaaacggatgggaccaggtcagacaat
ggccgtgtacgtaccaagcaggtcctgtccacggccagcagcgtgtccagccaggtggac
tcacgaggacgcagccgcaccaagatggtctcccagtcacaacgttccgacgaatccgat
tgcacaccaggatctcagtctgctacccctgttggtgccggcagtcggagtggctctccc
ggtcgtgtcctgacgagtacggccctgagcaccatgagctcgggggcccacagggtgctg
gccggggccagcggagacggacacagacgcagccgcatcccccgcagccagggctgctcc
agagactcttcccccacccgcctgtctgttgctccttccagcattagttccatctacaac
ggagcgagtagaggagctcggggcagtcgtatccctcggcccagtatgagtcagggctgc
agcagagaagccagcagggagagcagccgggacaccagccccgtacgctccttcacacca
cttgcgacgcggagctactctcgctccaccggagctctccacacacctgacgcttttggg
gctgcaggatcaggttttggcatcagtcaatccagtcgtctctcctcctcagtcagtgcc
atgagggtcctcaacacgggctcagacgtagaagaggcacttgcagatgcactgctgttg
ggagacatgcgatccaagaagaagcccgcacggcggcggtacgagaactacggcatgtac
tccgatgacgatgctaacagtgacgcatccagcgcctgctcagaaaggtcctacagctcc
cgcaatggaggagccatcccgacgtacatgagacagacagaggatgtggctgaggtgctg
aatcgctgtgctagtgccaactggtctgagaggaaggaggggctgttgggcctacaggca
ctactgaagaaccaacgcaccctcagtcgggtcgagttgaagagactgtgtgaaatcttc
accaggatgtttgcagacccacacagtaaggtgttcagtatgttcctggaaacactagta
gacttcatccaggtccataaggacgacctgcaggactggttgttcgtcctgctcacgcag
ctgctgaagaagatgggagcggacctgctgggctccgtacaggccaaagttcagaaagcc
ctggatgtcacacgagagtctttccccaatgacctccagtttactattctcatgaggttt
accgttgaccagacacagacgcccaacctcaaggtgaaggtggctatcctgaagtacata
gagacactaacgttacagatggaggctccagactttgtgaactctagtgagactcggctg
gctgtctcccgcatcatcacatggacaactgaacccaaaagctctgacgtcagaaaggca
gcccagtcggtgctaatcgccctgttccagctcaacactccagagttcaccatgctgctg
gcagctctgcccaaaacctttcaggatggagccaccaagctgcttcaaaaccatctgaag
aacactggcaatgctgcacaggcaccaatgggcagccctctgactcgccacacccccaga
tctccagccagctggtccagcccagtcacctcccccaccaacacctcccagaacaccccc
tcaccaagtgcttttgactatgacacagaaaacatgaactcggaggacatctacagctcg
ctgaaaggtgtcaccgaggcgatccagaacttcagcgtccgcagccaagaggacatgaat
gaaccagtgcagcggcgggaaggagaggagggaggcagcgggatggatggtagagtgtca
gacctgatggacggtggccgcatggctctggacaacaagacttccctcctcaacaccccc
ctgctctcctccagccccagaggagcccgcgagcacttctccgactcccccttcaagcac
agccgtaaagacaccagcctggacgactctgagcagctcactgatgagagcagcctggac
cagtcggagctggtggctgagctgctgaaggagctgtccaatcacaacgagcgcatagag
gagaggaaggcggcactgtgtgagcttctgaagctgattcgcgaaaacaccctgcaggtg
tgggatgaacatttcaagaccatcctgctgctcctgctcgagacgatgggcgacagagag
catgtgatccgaacactggctctgcgggtgctgagggaaattctcagcaaacagccctgg
aggttcaagaactacgcagagctcaccatcatgaaggccctggaggctcacaaagaccct
cacaaggaggtggtacgagcagcagaggagacggcggccatgttggccttgtccatcagt
ccagaccagtgtatcaaggtgttgtgtcccatcatccagtcagctgactaccccatcaac
ctggctgccatcaagatgcagaccaaagtggtggagaggattcccagagagggtctgatc
agcctgctgcctgagatagtgccaggactcatacagggttatgacaactctgagagcagt
gtgaggaaagcctgtgtattctgcttggtggccattcatgcagtgatcggagaggacctc
aaaccgcacctcagccaactctctagcagcaagctgaagctgctgaatctgtatatcaag
cgcgcccagtccggctccagtggcagtgaacccccatcagagggcctatag
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integrated database retrieval system
