Lates calcarifer (barramundi perch): 108897779
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Entry
108897779 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: peroxisome biogenesis factor 1
KO
K13338
peroxin-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
108897779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108897779
Membrane trafficking [BR:
lcf04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
108897779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-1N
PEX-2N
EF-hand_7
AAA_lid_3
EF-hand_6
EF-hand_1
AAA_22
EF-hand_5
AAA_16
AAA_14
nSTAND3
AAA_18
AAA_28
AAA_33
NPHP3_N
RNA_helicase
ABC_tran
Zeta_toxin
NACHT
DUF815
AAA_5
TIP49
Sigma54_activ_2
ATP-synt_ab
Viral_helicase1
AAA_29
AAA_2
RuvB_N
TsaE
Sigma54_activat
ATPase
AAA_7
Mg_chelatase
IstB_IS21
APS_kinase
ORC-CDC6-like
nSTAND1
FtsK_SpoIIIE
AAA_23
Parvo_NS1
AAA_3
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
108897779
NCBI-ProteinID:
XP_050922430
UniProt:
A0AAJ8AYH4
LinkDB
All DBs
Position
LG3:complement(10342786..10359073)
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AA seq
1448 aa
AA seq
DB search
MQRGFPGNGMSTAPPAEDSYSSCPNLLLLKMSEMSAMNRKLIQTLAESISKHVEHFNKTE
VECLIREFNVLMGEPATPGRAVTGLDRGKFRSILHNIFGMTDDMIMDGVFRSFDKDNDSF
VSMKEWIEGLSVFLRGTLDEKIKYCFHVYDLNGDNYISREEMFHMLKNSLIRQPTEEDPD
EGIKDLVEITLKKMDHDHDGRLSFADFEMAVREENLLLEAFGTCLPDTMNQALELSWSHG
SPLFLSWTQNRTSSSFDSHKVELCRQLGEKLGLKDGEQGFLRPCHQVSSVHQVFVEPLTS
DDWEILEIHSAALEQQLLDQIRVVFQDAVFPVWVDSHTAIYIRIASLLPSVPYGRLEQFT
ELVVSPKDRVGISDIRGSLMRTSEKQHPHRPTNLDLSSSSQESFENSAHVPQSQQWGGIA
DLRSLLRYVIKGTYDPVKELPPVPGIPALFTDSVYRVCCVPPDSLCTISHVATGVIHLFP
WRHGLNAGLIGGPSPVTYGLLSKVPSPKERRDRAKQAMEKKKNSGVTKVATPVDGGEEMK
EEEVMVVRVVCHSIEKVAGKQRSPSKGEIHSGRVWIPQPLALRLNIRPHSTVRIKPVTST
IKVASAIRLQPLRPLLEEDDEEIQAAFLGWLHTQSHEPLACLTARSGTILLHGTDAKLEF
ALTVLKPEPANDPADQLFLLAHTLIQKENIQVDRESVTMPAVSAVAEMPNPELPSLSILG
GIDELSRSGFEFISHSLLGSPLSRELCTTGQGLQGGALLITGAKGSGKSTLSRALCRKAR
EYLDAHVEVVDCRKLQGKRAETVRQMLQDIFEQAEWRQPSVVLLDDLDHVTGAPTSPEHE
QGPEALLQQHIAQSLKDVVDEVVAHASLVCLIITSQSEHSLHPSLTEAQRSHFIQGFVNI
QPPDQAQRVDILRRLILRKSSLSEESLQILDLGAVAKETEGYAPQDLALLLERAVHANTV
QRGHSDQGVCLSWKDFAQALKEFTPPSLWGVDLHTPSGVGLEKVGGLREVRQQLMDTILL
PAKYPILFSNLPIRHRSGILLYGAPGTGKTLLARAVAKESGMNFINIKGPELLSKYIGAS
EQGVRDVFQRAQAAKPCILFFDEFDSLAPRRGHDSTGVTDRVVNQLLTQLDGVEGLQGVY
VLAATSRPDLIDPALLRPGRLDKSLHCPPPDLESRVEILKALSTGVPLAADVDLEQLAAA
TEQFTGADLKALLYNAQLEAVHNSMGTSTPHELTSGSDSDMSLSSMIFPNNSSGSDDSVG
EGDPGMSLDQSMVLLEPDELQAEDDQHRSNVWRLYFGSSYESELGNSPILGLNSQCISGP
SSMTQDCTGASVRDTGGSLPPAYMSSLQSGYEELSPEQLERLQQDINNIKNNYRRGNEDC
TRVHSASSQPGLLLCQAHVNSALAVTRPSLSKSDWNRYTKLYEAFSGSGDGKAPHSVTFK
PGQRVTLA
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcggtttccctggcaacggcatgtcaacagcgcccccggctgaggactcgtat
tcatcctgcccgaacctcctacttctgaaaatgtcagaaatgtctgctatgaacagaaag
ttaatacagactctcgctgaatcaatctctaaacacgtggagcacttcaataaaacagag
gttgagtgcctcatccgagagtttaatgtgctcatgggagagcccgccaccccggggaga
gcagtcaccggcctggacagagggaagttcaggagcatcctgcacaacatctttgggatg
accgatgacatgatcatggacggagtcttcaggtcatttgacaaagacaacgacagcttc
gtgagtatgaaagagtggattgaaggactgtctgttttccttcgagggaccttggatgaa
aaaataaaatactgttttcatgtgtatgacttgaatggtgacaactacatatcaagggag
gagatgtttcacatgctgaagaacagcctcattagacagcccacagaggaggaccccgac
gagggaatcaaagacctggtggagatcacgctgaagaagatggaccatgaccatgatggc
aggctgtcttttgctgactttgaaatggcagtgagagaggagaacctgttacttgaagct
tttggaacctgcctccctgacaccatgaaccaagctttggagttgtcctggagccatggg
tctccactgttcctcagctggactcagaatagaacctcctctagctttgacagccataaa
gtggagttgtgtaggcaactaggagaaaagttgggcctaaaagatggagagcagggcttc
ctgagaccatgtcaccaggtctcatcagtccatcaagtgtttgtggagcccctgacatct
gatgactgggagatcctggagattcacagtgccgcgctggagcagcagctgttagatcag
atcagagtggtgttccaagatgccgtgtttcctgtgtgggtggacagccacacagccatc
tacatccgaatagcatcacttttgccatctgtgccctacggtcgcttggagcagttcaca
gaactagttgtctctccgaaggaccgtgttggaattagcgacataagaggctctctgatg
agaaccagtgagaaacagcatcctcacagaccgaccaacttggatctttcctcctcctcc
caagagtcatttgaaaattctgctcatgtacctcaaagccaacagtggggtggcatagct
gacttgaggagcctcctacgctatgtgataaaaggcacttatgacccagttaaagagcta
ccaccagtgcctggcatccctgccctgttcactgactctgtctacagagtgtgttgtgtg
cctcctgactctctttgcaccataagccatgttgcaactggtgttattcatttatttcct
tggaggcatggactaaatgctggactaattggaggtccgtctccagtgacatatggcctg
ctctccaaagttccttcccctaaagaaaggagggacagagccaagcaggccatggagaaa
aagaagaactcaggagttactaaagttgccactcctgtggatggaggtgaagagatgaaa
gaagaggaggtcatggtggtcagggtggtgtgtcacagcattgagaaggtagcaggaaaa
caaaggagccccagcaagggagagatccatagtggaagagtatggatcccccagcctctg
gccctcaggttgaatatcaggccacattccacagttagaattaaaccagtgacatcgact
atcaaagtggcctccgctattcgtctacagcccttaagaccactgcttgaggaagacgat
gaggagatccaggcggcttttcttggttggctgcacactcagagtcacgaacctttagcc
tgtctgactgcgcggtctggcaccatcctcctacatggaactgacgcaaagttagagttt
gctttaactgtgctgaagccagaacctgcgaatgatcctgctgaccagctgtttctactg
gcacacactcttatccagaaggaaaacatacaggtagacagagagtcagtaaccatgccg
gctgtgagtgctgtagctgaaatgccaaacccagagcttccctccctcagtattcttggt
ggcatcgatgagcttagtaggagtggatttgagttcatctcccacagccttctgggtagc
cccctctcacgagagctttgtaccactgggcaggggcttcaaggaggagctctactcatc
actggtgctaaggggagtggaaagagcactctgtcccgagccctctgcaggaaagctaga
gaatatttggatgcacatgtggaggtggtggactgcagaaagctacaaggcaaaagggca
gaaactgtgagacagatgctgcaggatatttttgaacaagcggaatggaggcagccttca
gttgtccttctcgatgacctggatcatgtgacaggggcaccaacctcacctgagcatgag
cagggccctgaggcactgcttcaacagcacattgcacagagtctgaaggatgtggtggat
gaggtggtggctcatgccagcctggtgtgcctgatcatcaccagccagagtgagcactct
ctccacccctcgctgactgaagcccagaggtcccacttcatccagggatttgtaaacatc
cagccaccagaccaggcccagagagtagacatcctgcgccgtttgatcctcagaaaatcc
agtctgtctgaggagagcttgcaaattctcgacctgggggctgttgccaaggagacagaa
ggttatgcacctcaagacttggcactgctgttggagcgagctgtccatgctaatactgta
caaagaggacacagtgaccagggtgtgtgtctgtcgtggaaagactttgcacaggctctt
aaggagttcacgcctccatctctgtggggggtggacctccacaccccaagtggagttggg
ctggagaaggtggggggtctgagagaggtgcgacagcagctaatggacaccatactgctc
cctgcaaagtatcccatcctgttctccaatcttcctatccgccatcgctcaggaatattg
ttgtatggagcccctggtacagggaagaccctgctggctagggctgtggccaaagagagt
ggtatgaacttcatcaacatcaagggacctgaacttctgagtaagtacattggagccagt
gagcagggagtccgtgatgtcttccagagggcacaagcagccaaaccctgcatcctgttc
tttgatgagtttgactctttggcccccaggaggggccacgacagcacaggtgtaacagac
cgtgtggtcaaccagctcctcacccagctggacggggtggagggactgcagggtgtatat
gtgcttgcagccacaagccgtccagatctgattgacccagccctgctgagacctggacga
ctggacaagtcccttcactgccctccacctgacctggagtctcgtgtggagatcctcaag
gctctgagtactggtgttcccctggctgcagatgtggacttggagcagctggcagcagcg
acagagcagttcacgggggcagacctgaaggccctgctctacaatgcacagctggaggcc
gtccacaacagtatgggcaccagcacaccgcatgagctgacttctggctcagacagcgac
atgagcctgtcctccatgatcttcccaaacaacagtagtggctcagatgattcagtgggg
gagggagacccaggcatgagtttggaccagtccatggttctcctggagcccgatgagctc
caggcagaagatgaccaacatcgcagcaatgtctggagactctacttcggaagctcctat
gagtcagagttggggaattcgccaattttaggactgaactcccagtgcatctcgggaccc
agctccatgacccaggactgcacaggggcatctgtccgtgacactggtggctctctccct
cctgcatacatgtcctcgctccagagtggatatgaagagctgagcccagagcagttggag
cgcctacagcaagatattaacaacattaagaacaactacaggagaggcaatgaggactgt
acccgggttcattcagcctccagccagccaggcctgttgctgtgtcaggctcatgtgaac
tcagccctggctgtgaccagaccgtctctcagcaagtctgactggaacagatacacaaaa
ctgtatgaagcctttagcggttcaggagatggaaaagctcctcattctgtcacatttaaa
cctggacaacgtgtgactttagcttga
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integrated database retrieval system
