Lates calcarifer (barramundi perch): 108897793
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Entry
108897793 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108897793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108897793
03036 Chromosome and associated proteins [BR:
lcf03036
]
108897793
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108897793
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108897793
PBAF complex
108897793
GBAF(ncBAF) complex
108897793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
108897793
NCBI-ProteinID:
XP_018553094
UniProt:
A0AAJ7VGX3
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All DBs
Position
LG3:9716029..9723486
Genome browser
AA seq
952 aa
AA seq
DB search
MTTMSGGTNLGIPGTSQTSSGAAAQRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKF
VLVDAPSCQALAAVTLQLLQFQEDAFGRQAASPALTKLPAQCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGAVEGALIQNNCMSPPVVYLDPILDKELASRLTN
IITKHQGTITEDRTLASHHIYPSPASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSL
SDVEGEVEEPPHPERPWRVHAGWVLDTDVFNEWMNEEDYCVDERSVPLILRQRIPLRDDQ
DAKSTPSKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGEMPRLSEGEDNITEQTHHII
IPSYTSWFNNNSIHLIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSREKPSDCQNFGLRTDIYAKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASAAAKAALEEFSRVQEDSVDKVSDVSNQPEKTESMDAEKM
ETNSGSHQVPGRADGLKVEPSGAKVEGDRVKRENAENILAEDRDGRGDDDESAGRRDGDG
DEGRRVMEQELVEGSVSTAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIK
LRHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQPGYTMQH
SGQSLPNRMMPSGGNTQPMAPRHPGAPNGMYPSSQPDGIAPAQPGPPASTHS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaatgtccggaggaactaatcttgggattcccgggacgagccagaccagctcc
ggggcggctgcgcaacggaaaaaagacagcagtccgtccgccaggttctgggagagtccg
gatactttagctcagctggaggtggtgcgacagtggatcgggaagcactacaaaaagttt
gtgttggtggatgctccatcatgccaggccttggctgcagtcactttacagctgctccag
tttcaggaggatgcctttggccgacaagctgccagtcctgctctcaccaaactgcctgca
cagtgcttcctggatttgcgaccagggggtggactctgccacattcttggaactgcctac
aagttcaaggctgagcaaggctggcgaaggtttgacttgcagaatccgtcgagaactgag
aggaacgtggagatgtttggtgcagttgaaggggcactgatccagaataactgtatgtca
ccgcctgtggtatatctagaccccatacttgataaggagttggcaagcaggctgaccaat
atcatcaccaagcaccagggtacaatcactgaggaccgaacgctcgccagtcaccacata
tacccctcacctgcttctacagaggaggatgaatggatgcgtcctgtcatgcgaaaagac
aagcatgtcttagtacactggggcatgcatcctgacagttatgatagctggctgtcctta
agtgatgttgaaggagaggtcgaagagccaccacatccagagagaccctggagggtccac
gctggttgggttctggacacagatgttttcaatgagtggatgaacgaggaagactactgt
gtggatgagaggagtgtaccattaatcctccgccaacgtattcccctcagagatgaccag
gacgcaaagtccaccccatccaaaaagagacgacgatccccctctcccccttcctctgaa
ggcaggaagaaaggaaagaaggggagaaggcgtggacaacaggaggaagaaccagaggag
gacttgaccaaagacatggaggaccctactcctgttcctaacatggaggaggtcatacta
cccaagaatgtcaacctgaagaaagacagtgagaatactcctgtcaaaggaggcaccatg
gctgatctggatgagcaggaggatgattttccaggaagggaggatgaagagggaagagga
gagatgccacgcttatcagagggagaggacaatatcacagaacaaacccatcacattata
ataccaagttacacatcttggttcaataataacagcattcacttaatagaaaagcgtgct
ctgcctgaattcttcaatggaaagaataaatccaaatctccagagatttacttggcatac
cgcaacttcatgatcgacacataccggctcaacccccaggagtacctcagttcaacgtcc
tgcagacgcaacctcactggagacgtctgcgccgtcatgagggttcatgcatttttggag
cagtggggtttgattaactaccaagtggatgcagagagcagacccctccccatgggaccc
cctccgaccccccatttcaacgtactggctgacacaccatccgggctggcccccctacaa
cacaaacccctgcaggtgtccgcctcgcagcacatgttgtattttccagagaagagcaga
gagaagccttcagactgccaaaacttcggtctgcgcaccgacatctacgccaagaaacac
cctaagactaaaggagcgagtgcaggaagggaatggacagagcaagagacactcttgtta
ttagaggccttagaggtttacagagacgactggaacaaagtgtccgagcatgtgggctcc
agaacgcaggatgagtgcatccttcacttcctccgtctgccgatagaagacccttattta
gaagactcctcggcctctctgggtccgctggcgtaccagcctgtgcctttcagccaatca
gagaaccccgttatgagcaccgtggcgttcctggcatccgtggtggacccacgggtggca
tcagccgctgcgaaggccgcactggaggagttttcccgagtgcaggaggactctgtggat
aaggtctctgatgtatccaaccagcctgaaaaaacagaatcaatggatgcagagaaaatg
gagacaaactctggctcccatcaggtccctggtagggcagatgggctcaaggtggaaccc
agtggggcaaaagtggagggagatcgagtcaaaagggaaaatgcagaaaatatattggca
gaagatagagatggaaggggagatgacgacgagagcgcaggacggcgagatggagacggg
gacgaggggaggagagtgatggagcaggagctggtggaaggcagcgtttccacggcagca
gcagctgctctggcctcagctgccaccaaggccaagcacttggcagcagtagaagagagg
aagatcaagtccctagtggctctgctggtggagactcagatgaagaagctggagatcaag
ctgagacactttgaggagctggaaaccatcatggaccgcgagaaagaggctttggagcag
cagcgccagcagcttctatcagagagacagactttccacaccgagcagctgaaacaggcg
gagatgaaggtccgccagcagagggagcagcaggggcagccgggttacacaatgcagcat
tcaggccagtccctgcccaaccggatgatgcctagtggaggcaatactcagccgatggct
ccccgacaccctggggctcccaacggcatgtacccgtcctcacagcctgatgggattgca
ccagctcagcccggtcctccagcatccacccacagctga
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