Lates calcarifer (barramundi perch): 108897815
Help
Entry
108897815 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: syndecan-3
KO
K16337
syndecan 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108897815
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108897815
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108897815
Proteoglycans [BR:
lcf00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
108897815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
TGF_beta_GS
Motif
Other DBs
NCBI-GeneID:
108897815
NCBI-ProteinID:
XP_018553122
UniProt:
A0AAJ7QDL5
LinkDB
All DBs
Position
LG3:complement(10464241..10500492)
Genome browser
AA seq
451 aa
AA seq
DB search
MKLPWLLALTALLAHAATAQTWSPVDDEGSTRDDFFDDEDLYSGSGSGFPEVSMRPTSVG
VSFTTEEPLLLSTTQATSPAPSASPAAEPSPNPEDPTATPLPTEADGESGAFWERELEKE
RERERELEKERERQRELEREREREKQLERERERERERERVRELEKERERERERERERERE
REREKERERQRERELERERELERIRAAAADQTTTAPRSPAAVPVTTNPSTSPAESAAPSA
GSDDLSTTEEEEDMYLSPEPTSFYPGFDMDTTTEEDTPTAAETTPEATTAASTTTTTTVR
TRVPFRPWVPMTTATQVMPTERTTRPQQPTATQEATNEVGAAGPSGDFEIREDRRNDLGR
GIMPVNPDLDGNTVDGGSSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRM
KKKDEGSYTLEEPKQATVTYQKPDKQEEFYA
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccttggctgttggcgctgacggcgctgcttgctcacgccgccacggcacag
acgtggtcaccggttgatgacgaaggctcgacaagagacgacttctttgatgatgaggac
ctctactctggctccggctctggctttcctgaggtcagtatgaggccgacatcggtgggc
gtgtccttcaccacagaagagcccctcctcctctctaccacccaggccaccagccccgcc
ccctcggcctccccagctgccgagcccagccccaaccctgaggaccccaccgccactccg
ctgcctactgaggccgacggtgagagtggtgcattctgggagagagagctggagaaggag
agagagagagagagggagctggagaaagagagagagaggcagagggaactggaaagggag
cgagagagggagaaacagctggagagagaaagagagagggagagagagagggaacgggtc
agagagctggagaaagagagggagagggagagagagcgcgagagggagagagagcgagag
agagagcgggagaaagagagagagaggcagagagagcgtgagcttgaaagagagagagag
ctggagagaatcagggccgccgctgccgaccagaccaccaccgccccgaggtcacccgcc
gctgttcctgtgaccaccaacccttcgaccagccccgcagaaagtgcagcgccctctgcc
ggttcagatgacctgagcaccacagaagaagaagaggacatgtacctgtcgcccgagccc
acctcgttttaccctggcttcgacatggacaccaccacagaagaagacacacccactgca
gcagagaccacacctgaagccacgacagctgcctctaccaccaccaccaccactgtcagg
accagggtccccttcagaccctgggttcccatgacgacagccactcaggtgatgccaaca
gagagaacaacccgcccacagcagcccacagctacacaggaggctaccaacgaggtgggt
gctgcagggccaagtggagattttgagatccgtgaggatcgccgcaacgatcttggtcgt
ggtataatgccagtgaatcctgatctggacggaaacacagtggacggaggaagctctgcc
gcccagctgccacagaagaacatcttggagagaaaagaggtcttgatagcggtgatagtg
ggaggcgtggtgggcgccttgttcgccgccttcctggtgatgctgctggtgtacaggatg
aagaagaaggacgagggcagctacacgctggaggaacctaaacaggccaccgtcacctac
cagaaaccagacaagcaggaagagttttacgcataa
DBGET
integrated database retrieval system