KEGG   Lates calcarifer (barramundi perch): 108897815
Entry
108897815         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: syndecan-3
  KO
K16337  syndecan 3
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04514  Cell adhesion molecules
lcf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    108897815
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108897815
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:lcf00535]
    108897815
Proteoglycans [BR:lcf00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   108897815
SSDB
Motif
Pfam: Syndecan TGF_beta_GS
Other DBs
NCBI-GeneID: 108897815
NCBI-ProteinID: XP_018553122
UniProt: A0AAJ7QDL5
LinkDB
Position
LG3:complement(10464241..10500492)
AA seq 451 aa
MKLPWLLALTALLAHAATAQTWSPVDDEGSTRDDFFDDEDLYSGSGSGFPEVSMRPTSVG
VSFTTEEPLLLSTTQATSPAPSASPAAEPSPNPEDPTATPLPTEADGESGAFWERELEKE
RERERELEKERERQRELEREREREKQLERERERERERERVRELEKERERERERERERERE
REREKERERQRERELERERELERIRAAAADQTTTAPRSPAAVPVTTNPSTSPAESAAPSA
GSDDLSTTEEEEDMYLSPEPTSFYPGFDMDTTTEEDTPTAAETTPEATTAASTTTTTTVR
TRVPFRPWVPMTTATQVMPTERTTRPQQPTATQEATNEVGAAGPSGDFEIREDRRNDLGR
GIMPVNPDLDGNTVDGGSSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRM
KKKDEGSYTLEEPKQATVTYQKPDKQEEFYA
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaagctgccttggctgttggcgctgacggcgctgcttgctcacgccgccacggcacag
acgtggtcaccggttgatgacgaaggctcgacaagagacgacttctttgatgatgaggac
ctctactctggctccggctctggctttcctgaggtcagtatgaggccgacatcggtgggc
gtgtccttcaccacagaagagcccctcctcctctctaccacccaggccaccagccccgcc
ccctcggcctccccagctgccgagcccagccccaaccctgaggaccccaccgccactccg
ctgcctactgaggccgacggtgagagtggtgcattctgggagagagagctggagaaggag
agagagagagagagggagctggagaaagagagagagaggcagagggaactggaaagggag
cgagagagggagaaacagctggagagagaaagagagagggagagagagagggaacgggtc
agagagctggagaaagagagggagagggagagagagcgcgagagggagagagagcgagag
agagagcgggagaaagagagagagaggcagagagagcgtgagcttgaaagagagagagag
ctggagagaatcagggccgccgctgccgaccagaccaccaccgccccgaggtcacccgcc
gctgttcctgtgaccaccaacccttcgaccagccccgcagaaagtgcagcgccctctgcc
ggttcagatgacctgagcaccacagaagaagaagaggacatgtacctgtcgcccgagccc
acctcgttttaccctggcttcgacatggacaccaccacagaagaagacacacccactgca
gcagagaccacacctgaagccacgacagctgcctctaccaccaccaccaccactgtcagg
accagggtccccttcagaccctgggttcccatgacgacagccactcaggtgatgccaaca
gagagaacaacccgcccacagcagcccacagctacacaggaggctaccaacgaggtgggt
gctgcagggccaagtggagattttgagatccgtgaggatcgccgcaacgatcttggtcgt
ggtataatgccagtgaatcctgatctggacggaaacacagtggacggaggaagctctgcc
gcccagctgccacagaagaacatcttggagagaaaagaggtcttgatagcggtgatagtg
ggaggcgtggtgggcgccttgttcgccgccttcctggtgatgctgctggtgtacaggatg
aagaagaaggacgagggcagctacacgctggaggaacctaaacaggccaccgtcacctac
cagaaaccagacaagcaggaagagttttacgcataa

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