Lates calcarifer (barramundi perch): 108897896
Help
Entry
108897896 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108897896
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108897896
microRNA pathway
RISC loading complex
108897896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
dsrm
DSRM_2
Motif
Other DBs
NCBI-GeneID:
108897896
NCBI-ProteinID:
XP_018553217
UniProt:
A0AAJ7QDD2
LinkDB
All DBs
Position
LG19:complement(2309430..2348252)
Genome browser
AA seq
1900 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGNYQGSAKRTVFLVNTASSVVQQAAAVRTHSDLQVGEYTDLGET
SAWTDQQWSQEIIENQVLVMTCHIFLHVLRNKILPLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYASQP
REVVLDCGPYVDKSGLSSRLQAELDEALHFLNDCNISVAREDRDPTFISKQVLSDCQAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKAFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVLDDDNI
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTLETQDGRFQSTLYLP
INSPLRVPVKGPAMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTAAQLDLITRLH
QYIFSHILRLEKPALEFKPMLADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPESCSEDGEGHCKHQQTVTPDPSSLTQPSSHHSSLPESGD
ATCTRNLTNGTALVADYDDSSHQDEHLHQHDNCQCSQPSSSGLQSSESIQTTTSVPVQPS
HSLNNPSSSPPQPSDECTPGRTSDHTNKATSVCSRAATGPNAPTARSPDLAAGPQHRAQA
GDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRL
SYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKLDSGEAK
EELLANGRSVNDYDEEDEEGEEVDEDGEVMLKDEPKDEVNMEDDLEYYKEHIKFIDNMLL
GSGAFAKKISLSVFPPSPTPASGSSPAMESPYEWKAPKKPLXIPPQAHFPSEPAPSGPSA
EEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGVELGKQSISYDLHTEQCIADKS
IADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGTLTGAVVQSRQTTAIDLCYGWL
KIPPRCMLDHPDAERTLNHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTITDCYQ
RLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAIS
PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMD
SRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTV
EVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcttacagcttgtcacccctgctacatcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataacatctatacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactattgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggaaattaccaa
ggaagtgcgaagaggactgtttttctggtgaacacagcttcgtctgtcgttcagcaagca
gctgcagtcaggactcactctgacctccaggtgggagagtacacagatttgggggaaacc
tcagcatggactgaccaacagtggagtcaagagataatcgagaatcaggtgctggtcatg
acttgccacatattcctgcatgttctgaggaataaaattttaccgttgtctaaaatcaac
ttggtggtttttgatgattgtcacctggccatcacagaccacccctactgtgagataatg
aagctgtttgaaggctgttcctgcagtcctcgtatcctgggtctcacagcctccattctg
aatggaaaatgtgacccatcagaactagagcagaagatccagaatctggagagaatcctg
aagagcaatgctgaaactgccaccgaccttgtcgtcctagacagatatgcctctcagcca
agagaagtggtgctggactgcggcccctacgtggataagagtggtctctcctctcgtctg
caggcggagctggacgaagctctccacttcctgaatgactgcaacatatcagttgccaga
gaggaccgtgatcccacattcatctccaaacaggtcctgagtgactgccaggctgtgctg
caggtgctggggccctggtgtgcagacaaggcggcaggcatcatggtgcgggagctccag
aagtacatcaaacacgagcaggaagagctcaaccgcaagttcctgctcttcaccgacacc
atcctgcgtaaagtgcacgccctctgcgaggagcacttctcccctgcctcactggacctc
aagtttgtcacccccaaggtcctcaggctgcttgagatcctgcacgaatacaagcccttc
gagcggcagcagtttgagagcgtggagtggtacaacaaccgtaaccaggacaactatgta
tcctggagcgactcagaggacgaagatgaggatgaggaagtggaggccaaagagaggcct
gaagccaactttccctcaccgttcaccaacatcctgtgtgggatcatctttgtggagaga
cgttacacagctgttgtcctcaatcgtcttatcaaagaagcggggaaacaggacccagag
ctggcttacatcagcagcaacttcattaccggccacagcattggcaaaaaccagccacgg
aacaaacagatggaagtggagttcaggaaacaagaggaggttctccgcaaattccgggct
catgaaaccaacctgcttatcgccaccagcattgtggaggagggcgtggatattccaaag
tgtaacctggtggtgcggtttgacctgcccacagagtacaggtcctatgtacagtccaaa
ggcagagctcgggcacctgtctccaactacatcatgttagctgacagtgagaggaccaaa
gccttcgaggaagacctcactacctataaggccatagagaagatcttgaggaacaagtgt
tccaaatcagtggaagtgagtgagtttgaggtggagcaggtactggatgatgacaacatc
ctcccgccctacgtgcttcgatctgaggatggaggtccccgggtcaccattaacacagcc
attggacacattaacaggtattgtgctcggttgcccagtgacccattcacccacttagca
cccaaatgtaaaactttggaaacacaggatggacgcttccagtccacactctacttaccc
atcaactcccctctgcgagttcctgttaagggtcctgcaatgaactgtgccagactggca
gagaaagctgttgcactagtatgctgtgagaaactccataaaataggtgagctggatgat
cacctgatgccagtggggaaggagacggttaagtatgaggaggagctggaccttcatgat
gaggaggagaccagcgtcccgggccggcctggctctaccaagaggagacagtgctaccct
aaagccataccagagtgtctgcgggacagttatgctgtaccggagcagacttactatcta
tatgtgattgggatggtcctcaccacccctctccctgatgaactcaacttccgcagaagg
aagctctacccaccggaggacaccaccaggtgcttcggcatcttgactgccaaacccata
cctcgaatcccccatttcccagtgtacacccgctcgggtgaggtgaccatctccatcgag
ctacagaagtctggcttcactctcaccgccgcccagctcgacctcatcacccgcctgcac
cagtacatcttttcccacatcctccgcctggagaaacctgcactggagttcaagcccatg
ttggctgactcagcatactgcgttctacctctgaatgttgttggggactccaacacactc
gatatggactttaagtttatggaggacatagagaagtctgaggcccgcactggcattcct
accactcagtacaccaagcagaaccccttcacctttaagctggaggactaccaggatgcc
gtcatcattccaaggtatcgtaactttgaccagcctcatcgtttctacgtcgctgatgta
tacacagacctgacgccactcagcaagtttccttcacctgaatatgagacgtttgctgag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgctcctggatgta
gaccacacctcatccagactgaacttgttgactcctcggcacctgaaccaaaagggcaaa
gccctgccactcagcagtgcagagaagaggaaggccaagtgggagagtctgcagaacaaa
cagatcctggttccagagctgtgtgccatccaccccatccctgcctccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgcctcctgactgctgaggagctc
agatcccagacggccattgaagctggagtgggagcccagaccctcccccctgacttcagg
tatccaaacctggactttggctggaagagatctattgacagtaaaacattcatctcctgt
cctgagtcctgcagtgaggatggtgagggtcactgtaagcaccaacagactgtaactcct
gaccccagctccctaacacaacccagtagtcaccactcttccttgcctgagtctggagac
gccacctgcaccaggaacctaactaatggcactgcccttgtcgccgactatgacgacagc
agtcaccaagacgagcaccttcaccaacatgacaattgccaatgctcccagcccagctcg
tctgggctgcagagctctgaatcaatacaaaccactacctcagttcctgtgcagccctct
cacagcttgaataatcccagctccagtcctccacagcctagtgacgaatgtacacctggg
aggacctcagaccacacaaataaagctacctcagtctgcagccgggcagccacggggccc
aacgctcccacagcacgttctcctgatctcgctgctggcccccagcacagagcccaggca
ggagactcccccaaaagcctggggcccaacccaggcctcatcctgcaggccttgacccta
tcaaacgcaagtgatggcttcaacctggagcggctggagatgctcggtgactctttcctt
aagcatgccatcaccacatacctgttctgtacctaccctgacgctcacgagggacgactc
agttatatgcgcagcaagaaggtgagcaactgtaacctgtaccgtctggggaagaagaag
ggactccccagcaggatggtggtgtctatcttcgacccccctgtgaactggctgcctcct
ggctatgtggtcaaccaggacaaaagcagcactgacaaactggattcaggggaggccaaa
gaggagcttctggccaatgggcgatctgtgaacgattatgatgaggaggatgaggagggt
gaggaggtggatgaggacggtgaggtgatgttgaaggacgagccaaaggacgaggtcaac
atggaggacgatctggagtactacaaggagcacattaagttcattgataacatgttgttg
ggatctggtgcatttgcaaagaagatttctctgagtgttttccctccctctcctaccccg
gcctcgggttcctcccccgccatggagtctccatacgaatggaaggcacctaagaagccc
ctcnncatcccaccacaggcccactttccctcagagccagcacccagcgggccctcggct
gaggagtttgactacagctcatgggatgccatgtgttacctggaccccagcaaggctgga
gaggaggacgactttgtggtgggtttttggaatccgtcggaggagaactgtggagttgag
ctgggaaagcagtcgatctcctatgacctgcacacagaacagtgcatcgcagacaagagc
atcgctgactgtgtggaggctctgctgggctgctacctgaccagctgtggggaaagagct
gcccagatgttcctctgctcattgggcctgaaggtgttaccattagagagagggacccta
acaggagcagtggtgcagagccgtcagaccacagccatcgacctgtgctatggctggcta
aagatcccgccccgctgcatgctggaccatccagacgcagagcgaactctcaaccacctc
atttctggcttcgagaactttgaaagaaagatcaactacacctttcagaacaaggcttac
ctcctgcaagccttcacccatgcttcctaccattacaacaccattacagattgttaccag
cggctggagttccttggtgatgcaattctagactacctcataacaaagcacctttatgaa
gacccgcggcagcactctcctggtgtgctgaccgacctgcgctcagcactcgtcaacaac
accatctttgcctctctggccgtcaagtacgactaccacaaatacttcaaggccatctca
cccgagcttttccacgtcattgacgactttgtgcagtttcagctggagaagaacgaaatg
caaggcatggactctgagctgcgacgctctgaagaagacgaagagaaggaggaggacatc
gaggtccctaaggccatgggggatatctttgagtcgctagccggagcaatttacatggac
agcaggatgtcattggagacagtgtggcaagtgtattatcccatgatgaggccacttata
gagaaattctctgccaatgtgccacgctctcctgtgagggagctgctcgagatggaacca
gaaactgccaagttcagtcctgcagagagaacatatgatgggaaggtccgggtgacggtg
gaggtcgttggtaagggcaagtttaaaggagttggccgcagctaccggatcgccaagtca
gcagcagcacgacgagctctgcgcagcctcaaagccaatcaacctcaggtccaaaacaac
tga
DBGET
integrated database retrieval system
