Lates calcarifer (barramundi perch): 108897923
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Entry
108897923 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat domain phosphoinositide-interacting protein 1
KO
K17908
autophagy-related protein 18
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04136
Autophagy - other
lcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108897923
04136 Autophagy - other
108897923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108897923
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108897923
Membrane trafficking [BR:
lcf04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
108897923
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108897923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40_Prp19
WD40
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_NWD2_C
BCAS3_WD40
WDR55
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
EIF3I
RMC1_N
Motif
Other DBs
NCBI-GeneID:
108897923
NCBI-ProteinID:
XP_018553246
UniProt:
A0AAJ7VGV7
LinkDB
All DBs
Position
LG11:complement(21029823..21048607)
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AA seq
457 aa
AA seq
DB search
METGEGAGGPGGPDGPALRFGCASFNQDSTSLALGTKTGYKLFSLTTVEKLDCIHESAET
PDVYIVERLFSSSLVVVVSTTMPQRMNVYHFKKGTEICNYSYPNNILAVKLNRQRLVVCL
EESIYVHNIKDMKLLKTLLNTPSNPSGLCALSVNHSNSYLAYPGSATIGEIIVYDANNLN
TVTMIPAHDSPVAALTFNTSATKLASASERGTVIRXFSIPEGQRLFEFRRGMKRYVNISS
LSFSPDGQFLCASSNTETVHIFKLEQLGPSGGDEAATWTAYMGKMFSAASSYLPAQVSGM
MSQDRAFATVHLLSSGQRNVCTLAMIQKLPRLLVATASGHLFIYNVDPLDGGECTLAHKH
RLFGVDDDQDERIDSEGSEVTGPAQACPSYAATAALPASGPVTATLTGYSEDGGAKKGEV
IPEHEFAAGPVCLDDENEFPPINWCRDGTGGGQGRRS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggagaccggagagggagctggcgggcctggcggaccggacggaccggcgctccggttt
ggctgcgcctctttcaaccaagactccacgtcactggctttgggaacaaagacgggctac
aagctgttttctctgaccacggtggaaaaactggactgcatccatgagagcgcagagact
ccagatgtctacattgtggagcgtctgttctccagcagtctggtagtcgtggtgagcacc
accatgccgcagcgaatgaacgtctaccacttcaagaaggggacggagatctgcaactac
agttaccccaacaacatccttgctgtcaagctcaacagacagagactcgtggtgtgcctt
gaagagtccatctatgtccacaacatcaaagacatgaagctgctcaagactctgctcaac
actccgtccaacccctcaggtctctgtgctctttctgtcaatcattccaactcctacctg
gcataccccggcagtgccaccattggagagatcatagtgtacgatgccaacaatttgaac
acagtgacaatgatcccagctcatgacagtcctgtggcagctctcaccttcaacacctca
gccaccaaacttgccagcgcctcagagagaggcactgtcattcgangtttctccattccc
gaaggccagcgcctgtttgagttccgccggggcatgaagaggtacgtcaatattagctcc
ctgtccttcagccctgatggtcagttcctctgtgcttccagcaacacagagacggtgcat
atctttaaactggaacaactgggacccagtggaggggacgaggctgccacctggacagcc
tacatggggaagatgttctcagcagccagcagctacctccctgctcaggtatctggtatg
atgagccaggaccgggccttcgccaccgtccacctcctctcatctggccagaggaacgtc
tgcaccctggctatgatccagaagcttccacggctgcttgtggccacagccagcggccac
ctgttcatctacaacgtggatccactggacggaggcgagtgcacgttggctcacaaacac
agactctttggtgttgatgatgaccaggatgaaagaatagattctgaagggtcagaggtc
acagggccagcacaggcctgtccatcctacgctgcgactgctgccttaccagcttctgga
cctgtcactgcgaccctcactggttattctgaagatggtggggcaaagaaaggtgaagtc
attccagaacacgagtttgctgccgggcctgtgtgtctggacgacgagaacgagtttcct
cctattaattggtgccgcgacgggactggaggtggccaggggaggcgctcgtga
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