Lates calcarifer (barramundi perch): 108897961
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Entry
108897961 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108897961
03041 Spliceosome [BR:
lcf03041
]
108897961
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108897961
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108897961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108897961
NCBI-ProteinID:
XP_018553290
UniProt:
A0AAJ7QDU6
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All DBs
Position
LG19:8250616..8274592
Genome browser
AA seq
1420 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANLVQSLPDWAS
QITNTDTVAAVAQILQSPQGQQVSQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDAERGEDSKKDTSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKTMSIEGQDSIFGQENSVSTAQSSSQPQLSEPE
NKLDDSIDNQQQDMDLDEGPDGMEEEIFEAEEKKTVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWE
AAKNAEPAKEVTSQPVSAETTAVSNTQTETYSQQVTMMPVQLPVAQAVPGAVGLVPPTFP
VTMGIPPPGYGPPPPFIRAGFNTSQPPPGFMQAAQTAGMASATTSLVQPSVASSQEAVKD
SPFSAMIPPTGTIPGSFMPSAIPGAGVFNPVGVQTQQASNEKTAQSAEGLDAATELTLQG
MQNAVRSGMGLLGMHPTASLTHPLHQSGLTGQRMPGLLPLDVRPNLLQPGAAARFPLLMQ
PGPAQQAAGLLDSSLQAQARARAPFSQLDPFNRAPNLPNENLSKTEDESSSGADEGKDQD
YRFPPMEKQSTGLLRTPPPEHREPLGGGAGGGGGRPPLLQTPGTQPARTSLVGRLQALAG
FTPDNRWNQARGDFDERDGMRGGPQAPAGPKGFQEERPTSGQNFPNRFDSRPATAGGAGG
GAGVPGNAGAAGGPQPWNRSGGAAAPFDSELHQDLDDRRRPWERQRDRDERDFDFRREMN
GNRHSRERERERERDRERDRERGRDRNRELERDRDRDKDRDRERERERGGWTPLLPLPTP
LLPTPPLNPNLTLNQGKLLSPLKLNPQMQPRFQSPLLPQGQAKPSLMGLNQLLPQVQIKS
PPSSQSQAATPESQSETPTPSETPQVQSPPSVQSPDPSPDNKGQSPLTQAPTHAESSPQS
ETPPQTESQSPPPAQSPSNISASPDTETPIQALPLVEASPQDSPVAFTLAASTPEETTHF
LEEQESPLKDEEESQEGDSSPQPQWVNGPGMDNSNAAEPTPEGSPEPTPDPSDSVLPDSD
PEQQQEQLASPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtcaaagcctttaacaatgagctgtactcattgaatgagtacaagccaccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaagctataaaattctac
aaacatgttgtccagagtgtagaaaagttcatacaaaagtgcaaaccagaatacaaggtt
ccaggtctgtacgtcatcgactcaattgtgagacagtcacgacaccagtttggcacagag
aaggatgtttttgcaccacgcttcagcaagaatatcatcgctacgttccagcatctctac
cgctgcccttcagatgataagagtaagatagtgcgagtcctcaacctgtggcaaaagaat
gctgtcttcaagagtgacatcatccagcctcttttggacatggcagcagggattcctcct
cctagtgtcacccctgttatgcccagcagtgctgccccagtcaataacactacacctggc
actcctgccaccccagccaccccagccaacttagtccagagtctgcctgactgggcttca
cagattaccaacacagacactgtggctgctgtggcacagattctacagagtccccaggga
caacaggttagtcagctggtacagagtctacagatgcagcagcagaagccacagccatcc
ctgctgcaggccttggacgctggcctagtggtgcagttacaagctctgacagcacagctc
actgcagctgctactgccaacagcctcaaccccctggagcagagagtctcctcttttaat
aagaaacttttgggtccgtttgactttgggaatgatgcggagcgcggcgaagactctaaa
aaagacacttcatcatctcaactgcccatggtgtccgagcctatcaacagctccctcttc
catcagttagctgagcagctacaacaacagaacctggagcagtttcaaaagcagctgcta
gagcaccagcagcaccaacagaagactatgagcatagaagggcaggattcaatctttggg
caagagaactctgtttcgaccgctcagagcagcagccagccacaactttctgagccagag
aacaagttggacgactccatagataaccaacagcaggacatggatctggacgagggccca
gatggaatggaggaggagatctttgaggcagaggagaagaagactgttagcacacggtcc
agaacacgctcaaggtcccgctctaggtctcccaagaggagacggtccaggtcccgttct
ggctcacggaaacgtaagcaccgcaaacggtcccgctctcgctccagagatcgcaagagg
aagacttcgcggtcttactcaagtgaaagacgtgcccgagagcgagagaaggagcggcag
aagaaaggactgcctcccatacgatcaaagactctaagtgtctgcagcacgactctgtgg
gtgggtcaggtggacaaaaaggccactcagcaagacctcaccaatctgtttgaagaattt
ggccagattgagtctataaatatgatccctcccagaggctgcgcctacatctgtatggtc
cacagacaagatgcgtaccgtgcccgccagaagctcagcactggctcctataaaattggc
tccaagatcatcaagattgcgtgggctctgaacaagggggtaaagcaggagtacaagcag
ttttgggatgtggacctgggtgtcacctacataccctgggagaaggtgaaggtggatgat
ctggatggctttgctgagggaggaatcattgaccaggagaccgtcaatgatgagtgggaa
gcagccaagaatgctgagccagcaaaggaagttaccagtcagcccgtaagcgctgaaact
acagcagtgtccaacacccagactgagacctacagccagcaggttaccatgatgcctgta
cagctaccagttgcccaggctgttcccggtgcagtaggtttggtgccccccaccttccct
gtcaccatgggtatacctcctccaggctacgggccaccaccacccttcataagagctggc
ttcaatacctcacagcctccaccaggttttatgcaggcagcacagacagcaggcatggcc
tcagcaactacttctctagtgcagccttcagtggcctccagccaagaagctgtcaaagac
tcaccattcagcgctatgatccctccgaccggcaccatccctggcagctttatgccctca
gccatccctggagctggtgtgttcaacccagtgggagtccaaactcaacaagcctccaat
gagaaaacggctcagtctgcagagggtttggatgctgctacagagctcacactgcaaggc
atgcaaaatgcagtccgcagtgggatgggtctccttggcatgcaccctacagcttccctc
acccacccgctgcatcagtctggtctgactgggcagagaatgcctggcctgttgcctcta
gatgtgcgacctaacctcctccagcctggggctgcagctcgcttcccactcctcatgcag
ccgggccctgcccagcaggctgctggtctccttgatagctctctccaggctcaagctcgt
gccagggctcccttctctcagctggaccccttcaacagggccccaaatcttcccaatgaa
aacttatccaagacagaagatgagtcttcctctggtgctgatgagggcaaagaccaggac
tatcgcttccccccgatggaaaagcagagcacaggcttgctgaggactcctccaccagaa
cacagggagccccttggaggtggtgcaggaggaggaggaggcagacctcccttgctccag
accccagggactcagccagccagaaccagcctagtgggacgtctgcaggctcttgcaggc
ttcactcctgataaccgctggaaccaggccagaggggactttgatgagcgggatggcatg
cgaggaggcccacaggctcctgctggtccaaaaggcttccaggaggagcgccctacctct
gggcagaacttccccaaccgctttgacagccgtcctgcgacggcaggaggagcaggagga
ggagctggggttcctggaaacgctggagccgctggtggaccacagccctggaaccgaagt
ggtggtgccgcagcaccttttgacagtgaattacatcaagacctagatgaccgaagacgg
ccatgggaaaggcaaagagacagagatgaaagagattttgacttcaggagggagatgaat
ggtaaccgccacagccgtgagagagagcgcgagagggagagagacagggagagagacagg
gagcgaggccgagatcgcaacagggagcttgaacgtgacagagaccgtgacaaagataga
gaccgtgagagggaacgtgaacgtgggggctggacacctcttcttcctcttcctacacct
ctgcttccaacgccacctcttaatcctaacctgaccctgaaccaaggcaaactactttca
ccactcaaattgaacccccaaatgcagccacgattccagtccccactcctgcctcaaggt
caggccaaaccttccctcatgggtctgaaccagttgctgccccaggttcagatcaagtct
ccaccttcatcacagagccaagcagctacgcccgagtcccagtcagagaccccaactcca
tctgagacacctcaggtgcagtcgccaccctcagtccaatcacctgacccatcacctgac
aacaagggacagagcccgttgactcaggctcccacccacgccgagtcatcaccacaatct
gagacccctccacaaacagaatcacaatccccacccccagcccagtccccctccaatatc
tctgcttctccagacactgagacccctatccaagccttacctctggttgaggcgtcaccc
caggactcacctgtggccttcacactagctgccagcacccctgaagagaccactcacttt
ctggaggagcaggaaagcccactgaaggatgaggaggagtcacaagagggagactcctca
ccccaaccccagtgggtcaacggacctgggatggacaatagcaatgcggctgaacccaca
cctgagggctctcctgagcccactccagacccttctgattctgtgctccctgacagtgat
ccggagcagcagcaggagcagcttgcctctcctaaggacgtagacaatgaacagagtgag
cccatggaggaagctgcgagtcagccagtggtagacactgtcacagacactgaggggaca
taa
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