Lates calcarifer (barramundi perch): 108898001
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Entry
108898001 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108898001
09123 Folding, sorting and degradation
03018 RNA degradation
108898001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108898001
03041 Spliceosome [BR:
lcf03041
]
108898001
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108898001
mRNA cycle factors
Stress granule specific factors
108898001
Spliceosome [BR:
lcf03041
]
Complex C
Other components
Complex C specific factors
108898001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
DUF6262
Motif
Other DBs
NCBI-GeneID:
108898001
NCBI-ProteinID:
XP_018553354
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All DBs
Position
LG19:7714071..7723107
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AA seq
640 aa
AA seq
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MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDDRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPSSLRQPGPRANLRHMTPSGSTQGPRATGQ
AMAPRPSMGVPGPRAMPPYKYATGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLAA
APXQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKGGQHGYYCCCCYILKTVHCIRLGTEK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacggggagttatccaatggcttctctctacgttggcgacctgcacccc
gatatcacggaggctatgctgtatgagaaattcagcccagccggaccggtgctctccatt
cgggtatgccgagacatgatcacccggcgctccctgggatacgcttatgtgaacttctcc
caacctgctgacgctgagcgagccctggacaccatgaactttgacgtggtgaaaggaaag
cccatcagaatcatgtggtcccaaagagacccctccctcaggaagtctggagtgggcaac
gtgttcatcaagaatcttgacaagtccattgacaacaaagccctgtacgataccttctct
gcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggctac
gcttttgtccatttcgagacccaggacgcagctgatcgcgccattgagaagatgaatggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaagaacgggag
gctgagctcggcgccaaagccaaagagtttaccaacgtctacatcaagaactttggggat
gatatggacgacgatcggctgaaggagctctttgacaaatatggtaaaacactcagcgtg
aaggtgatgacagaccccaccggcaaatccagaggctttggatttgttagttacgagaag
catgaggacgctaacaaggctgtggaggacatgaatggcactgaactcaatggcaagact
gtgtttgtgggccgggcgcagaagaagatggagcggcaggcagagctgaagaggaagttt
gagctgctgaaacaagaaaggatcagtcgttatcagggtgtaaacctttacattaagaac
ctggatgacactatagatgatgagaaactgcgtaaagagttctctccatttggatccatt
acaagtgctaaggtgatgcttgaggagggtcgctccaaaggctttggctttgtttgcttc
tcttcccctgaagaggccaccaaagctgtgactgagatgaacgggcgtattgttggctcc
aaacctctctacgtggctcttgctcagcgcaaagaggagcgcaaggcccaccttaccaac
cagtacatgcagcgtattgctggcatgagggccatgccggctaatgccattatcaatcag
ttccaacccaccagtggctacttcatgccagctgtgccacaggcccagaataggactacg
tactacgcacccaatcaactggcccaaatgcgacccaacccccggtggcagcaacaaggt
ggtagaggtcaaggtggtttccaggggatacccagctcactgcgtcagccaggaccacgt
gccaacctgagacacatgactcctagtggcagcacgcagggcccacgagctactggccag
gccatggctcctcgaccctcaatgggagtcccaggccccagagccatgcctccttacaaa
tatgccaccggtgtccgtaaccccaacccccaggtggtgcaaccgattgccttacagcag
gctcagccagctgtgcacgttcagggccaggagcccctcacagcctccatgctggctgct
gcacccncccaggagcagaaacagatgctaggggagcgccttttcccactgattcaggcc
atgcacgccaacctggcaggaaagatcactggcatgctgctggagatcgacaactctgaa
cttctacatatgctggagtctcatgaatctctgcgttcaaaggtggaagaagccgttgcc
gttctacaggcccatcaggcaaagaaagatgcaacccaaaaaggtgggcagcatggctac
tactgctgctgctgctacatcctgaagactgtgcactgtattagattgggcacagaaaaa
tga
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