Lates calcarifer (barramundi perch): 108898064
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Entry
108898064 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: PH-interacting protein
KO
K11797
PH-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108898064
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108898064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Bromodomain
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_HPS5
McrBC
Auxin_resp
Motif
Other DBs
NCBI-GeneID:
108898064
NCBI-ProteinID:
XP_018553429
UniProt:
A0AAJ7QDW1
LinkDB
All DBs
Position
LG7_1:16778981..16812940
Genome browser
AA seq
1836 aa
AA seq
DB search
MASDSTHIAQLTSELYFLIARFLQAGPCQKAAETLIREVEEKELLPKRLDWTGQEHPGTY
ENLVKLYRHISPDHLLQVCTRVCPLLEREVPASVPGLTSLLGAGRQNLLRTSKSCKHVVW
KGSALAALHCGRPPEPPVIYGSPPNIVETSFSRRLNGSYRLRQLVPTAVYQHMKMHKRIL
GHLSSVYCVTFDRTGRRIFTGSDDCLVKIWGTDDGRLLATLRGHAAEISDMAVSYENTMI
AAGSCDKTIRVWCLQTCAPLAVLEGHAASITSLQFSPLCSGSKRYLSSTGADGTICFWQW
DARTLKFGQRPSKFTERSRPGVQMICSSFSAGGMFLATGSTDHIIRVYYFGSGQPEKISE
LESHTDKVDSIQFSHCSDRFVSGSRDGTARIWQLQPQGWRSILLDMQTKLPGKYNPPPLE
DKVTKLKVTMVAWDRHDSTVITAANNLTLKVWNSTTGNLVHVLMGHEDEVFVLEPHPFDP
RILFSAGHDGNCIVWDLARGVKIRSYFNMIEGQGHGALFDCKCSPDGQHFAATDSHGHLL
IFGFGSSSKYDKIADQMFFHTDYRPLIRDANNYVLDEQTQQAPHLMPPPFLVDVDGNPHP
PRYQRLVPGREGCRDEQLIPQMGVTSSGLNQVVSEQAVDGPSPLDTMIQRLQQEQDQRLG
TNDVSASAAANTRASRGSVGSPTEVHSPPNVGLRRSGQIEGVRQMHSNAPRSQMATEGDL
VAWSRRVLVPELEVASVRRQVNWREAKGEEEINIYQSERRRRTIHSLPKESRVHPTSECV
VDEGRRSQGNHGYHTRAAMEETSRQSAEAADDDDSTSEGEVEVRQINGHSSEEEKEDEEK
EPWPDDHSSSSDYSSDYSDWTADAGINLEPPKKSVKVKKKSSGSEEDGEKKRDGKKERKK
DKPDKDGALPKKKKPKEKRKRTEFQEQGLTLEEWLPSAWITDTVPRRCPYIPQMGDEVYY
FRQGHEAYVEMAKQKKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLSFL
DPDTGKLTGGSFSMKYHDMPDVIDFLVLRQQFDNARKRQWSIGDRFRSVIDDAWWFGTIE
SQEPYQPQYPDSLFQCYNVCWDNGDTEKMSPWDMEPIPDDATFPDELGMSVPLTEEEQKE
LLYVPLDGEWGCRTRAEECERIIKAIDQLCTLDVAAPFAFPVDLQAYPTYCTVVAYVTDL
STIRQRLVHRFYRRLSSLMWEVRYIEHNAQTFNEPGSFIVTTAKFVSDLMLQFIKDQSLT
DLMPLYKTMKKATFSDSEDEDEEDDDEDTNTPGTSTRNHKGRRPMQRQLRTRPPSYDPHA
WRGRCKELLDLIFQCEDSEPFREPVDLQEYPDYLQIVESPMDFGTVLNTLTEGKYQSPIE
LCKDVRLIFSNSKAYTPSKKSRIYSMSLRLSALFEEHVSSILADYKAIHGLTDKLTRQGT
DRQTRHTTDRQTRHAMKRRRRRSESPASSTASSPERKRRVSSRVTAKREPSPAPPRPSSL
RQSVPLKQPPQLVNGKADAPAAGRTRSAARHSAHSPPATSSSHNATNNTPSTAESTRSLR
AHNSAPTPPAPEKVTPSPATESSSGGSTRRKLRTPVRHTPGSPASPSSQSTVHLNGHSSH
MTLGVGRRGRKSRMDPPLSPPEVTTPASPSRPRGRPPGKKRGRKSKQELEEMRRSSTRRS
STPDDELDQSTGDEGGTSSAQETSVLSDSGMPSTPRRRGRPRVVRTDESTPPAESPEPSP
LRRSSRRTNEEVTPPPQTAPQKSTRKESPKEEAGEGAGGSMRTRNQGRRSAWYMEEDSEE
EQRQLLFEDSSITFGTSSKGRVRKLTEKAKANLIGW
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagacagtacacacatcgcgcagttgacttctgaactgtacttcctaatagcc
cgatttctacaagctggaccgtgtcaaaaagcagccgagaccctgataagggaggtggag
gagaaggagctgctacccaaaagactggactggacagggcaggaacaccccgggacgtac
gaaaatttggtgaagctctaccgccacatcagtccagaccacctgctgcaggtctgcacc
agagtttgtcccctgctggagagggaggtccctgccagcgtgcctggactcaccagcctg
ctgggggctggcaggcagaatctcctccgcaccagcaagagttgcaagcatgttgtgtgg
aagggctccgcactggctgcacttcactgtggaagaccaccagagccaccagttatctat
ggaagcccacctaatattgtggagaccagcttcagccgtcgactgaacggctcctaccgt
ctccggcagctggtgcccaccgccgtgtaccagcacatgaagatgcacaagaggatcctg
ggacacctgtcgtccgtctactgcgtcacctttgacaggacgggacggcgcatcttcacg
ggctcagacgactgccttgtgaagatctggggaacagatgacggacgtctgctggcgacg
ctgcggggccatgctgctgagatttccgacatggccgtcagctacgagaacaccatgatc
gctgctggttcctgtgacaagaccatcagagtttggtgcttacagacctgtgcccctttg
gctgtcctggagggacatgcagcctctatcacgtcactacagttttctcctctctgtagt
ggttccaagcgctacctgtcctcaaccggagctgatggaaccatctgcttctggcagtgg
gatgcacggacgctcaagtttggtcagaggcccagtaaattcacagagcgttccagacct
ggcgtccagatgatctgctcctcattcagcgcaggtggtatgttcctcgccacaggaagc
acggatcatatcatcagggtgtactactttggttcaggccaaccagagaagatctctgaa
cttgagtcccatacagacaaagtcgacagcatccaattttcacattgcagtgacaggttt
gtgagcggcagcagggatggtacagcacgaatctggcagctgcagcctcagggctggaga
agcattctgctggacatgcagaccaaattacccgggaagtacaaccctcctccactggaa
gacaaggtgaccaagcttaaggttaccatggtagcgtgggatcgccacgacagcacggtg
atcactgcagccaacaatctgactctaaaggtgtggaactccaccaccggaaacctcgtc
catgtcctgatgggtcatgaggatgaggtgttcgttctggagccacacccttttgatcca
agaatccttttctcagcggggcatgatgggaattgtattgtgtgggacctggccagaggg
gtcaagatccgctcctatttcaacatgattgagggccaagggcatggggcgttgtttgac
tgcaaatgtagtccagatgggcagcattttgcagccacagactcccatggacacctgctc
atctttggcttcggctccagcagcaagtatgacaagatagcggaccagatgttcttccat
accgactaccggccactgatccgggacgccaacaattacgtgctggatgagcagactcag
caggcaccacacctaatgcctcctcccttcctggtagacgtggacggaaacccccaccct
cctagataccagcggctggtgcccggcagggagggctgcagggatgagcagctgatccca
cagatgggggtcacttcctcaggcctgaaccaagtggtgagtgagcaagcggtggacggt
cccagtcctctggatacaatgattcagaggctgcagcaggaacaggaccaaaggctgggg
acaaatgatgtgtctgcctctgccgctgcaaacaccagggccagcagaggctcggtgggt
tcgcccacagaggtgcactccccacccaatgttggtcttcgtcgcagcggtcagatcgag
ggtgtccgccagatgcacagcaacgccccgcgcagccagatggccacagagggagacctg
gtggcctggagccgcagggtgcttgtccctgagctggaggtcgcctctgtcaggagacag
gtgaactggcgtgaggctaaaggggaggaggaaatcaatatatatcagtcagaaaggagg
agacgtaccatccactctctccccaaagagagcagggttcatcccacatcagagtgtgta
gtggatgaggggaggaggagccagggtaaccatggttatcacactcgtgctgccatggag
gagacgagtcgccagagcgctgaggctgcagacgatgatgacagcacctcagagggagag
gtggaggtacggcaaatcaacggacattcctcagaggaggagaaggaggatgaggaaaaa
gagccgtggccggatgaccacagtagttcaagcgactactccagcgattactctgactgg
acggcagatgcagggatcaaccttgaaccgcccaagaagagcgttaaagtgaaaaagaag
agcagcggctccgaggaggacggagagaagaagagggacgggaagaaagaaaggaagaaa
gacaaaccggacaaagacggcgcattaccaaagaagaagaagccaaaggagaagaggaag
aggacagagtttcaggagcaagggttaactctggaggaatggcttccctctgcatggatc
acagacacggttccccgcagatgtccttacataccccagatgggagatgaggtgtactac
ttcagacaaggccacgaagcctatgtggagatggccaaacagaaaaagatttacagcatc
aatcctaagaagcaaccctggcacaagatggagctgcgggagcaggagttgatgaagata
gttggcatcaaatacgaggtgggcttgcccacactgtgctgtctgaagctttctttcctg
gacccggacactggcaaactgaccgggggatccttctctatgaaataccacgatatgcct
gatgtaatcgacttcctggtgttgcggcagcagtttgacaatgccagaaagaggcagtgg
agtataggtgacaggtttcggtcagtgattgatgatgcctggtggtttgggaccattgaa
agtcaggagccctaccagccccagtatcctgacagcctgttccagtgctacaatgtctgc
tgggataatggagacacggagaagatgagtccttgggatatggagcccatccctgatgat
gccacgttccctgacgagttgggaatgagcgtcccgctgacagaggaggagcagaaggag
ctgctatacgtccccctggacggggaatggggctgccgcacacgcgcagaggagtgcgaa
cgcatcatcaaagccattgaccagctctgcacacttgatgtggcagcgccatttgccttt
ccagtggacctacaggcttaccccacatactgcacagtagtggcctacgtcactgacctc
agcaccatacgccaaaggctagtgcaccgcttctacagacgactgtcctctctgatgtgg
gaggttcgttacattgaacacaacgcccaaacattcaatgagccaggatcattcatcgtc
accaccgccaagtttgtctctgacctcatgctgcaatttattaaggaccaaagtctgaca
gacctcatgcccctctacaaaacgatgaagaaggcaaccttctctgactctgaagatgag
gatgaggaggatgatgatgaagatactaatactcctggaacatccacacgaaaccataag
ggtcgtcgtcctatgcagcgccaactgcgaacccgacctccctcatatgaccctcatgcg
tggaggggacggtgtaaggagctgctggacctgatctttcagtgtgaagactcagagccc
ttcagagaacccgtggacctacaggagtacccggactacctgcaaatagttgaatctcca
atggactttggcacagttctcaacacgctaacagagggaaagtaccagtctcccattgag
ctctgcaaagatgtccgacttattttcagcaattccaaagcttacacgcccagtaagaag
tctcggatctacagtatgagtctgaggctgtctgcactgtttgaggagcatgtcagctcc
atcctggctgactacaaggccatccacggcctgacagacaaactgaccagacagggcaca
gacagacagacgcgacacactacggacagacagacacggcacgccatgaagagacggagg
aggaggagtgagtctcctgcaagcagcactgcatccagcccggagaggaagaggcgcgtg
tcatccagggtgaccgcaaaaagagagccatcaccagctccaccacggccttcctcactg
agacagagcgtccccctgaaacagcccccccagttggtcaacgggaaggcggatgcaccg
gctgcggggcgaacacggagcgcagcacgccattctgcacactcaccgcctgccacatcc
tcctcacataatgccacgaacaacacaccgagcacagcagagtctactcgttcgctgagg
gctcataactcagctccaacgccaccagctcccgaaaaggtaacaccctctccagccaca
gaaagtagcagcggaggaagcacccggcggaaactcaggacacctgtacgacacacacct
ggctctcctgccagcccttcatctcagagcacagttcacctgaatggccacagtagtcat
atgaccctgggtgtggggaggaggggacggaaatccagaatggacccaccgctgagtcct
ccagaagttacaactccggcgagtccctccagaccccgaggtcgcccccccggcaagaag
agaggcaggaagagcaaacaggagctggaggagatgagaaggagcagtacccgaaggagc
tccacccctgacgatgagctcgaccaatccacaggtgacgaaggtgggacatcttccgcg
caggaaacatctgtgctgtcggactctggcatgccgtcgacgcctagacggcgcggccgg
cccagagtggtaagaactgatgaatccactcctcctgctgagtcaccagagccctcgcca
ctgaggaggagcagcaggagaaccaatgaggaggtcacccctcctccgcagactgctcct
caaaaatcaactcgcaaggagtctccaaaggaggaggcaggggagggggcaggagggtcc
atgcgcacacgtaaccaggggcgacggtcggcctggtacatggaggaggactctgaggaa
gagcagaggcagctgctgtttgaggactcatcaatcacctttggcacctcctctaaggga
cgtgtccgcaagctgacagaaaaggccaaagccaaccttataggctggtag
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integrated database retrieval system
