Lates calcarifer (barramundi perch): 108898069
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Entry
108898069 CDS
T04895
Name
(RefSeq) SNW domain-containing protein 1 isoform X1
KO
K06063
SNW domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108898069
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108898069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108898069
Spliceosome [BR:
lcf03041
]
Complex B
Other components
Prp19-related factors
108898069
Complex C
108898069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
108898069
NCBI-ProteinID:
XP_018553435
UniProt:
A0A4W6D947
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Position
LG7_1:complement(17216159..17223885)
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AA seq
531 aa
AA seq
DB search
MSLASFLPAPTQLSQDQLEAEERLRAQKSYSTALVSSHREPPPYGHRKGWVPRSLEDFGD
GGAFPEIHVAQFPLEMGRKKKTSNALAVQVDAEGKIKYDAIARQGQGKDKVVFSKYTDLL
PKEVLNEDSSELQRPDEEAVKELTEKTRAALEKQVSQKIAAAMPVRAADKQAPAQYIRYT
PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
AVEMRAQVEKKMAQKEKEKKEEKLRELAQMARDRRAGIKTGGEDSEARERDEIRHDRRKE
RQHDRNISRAAPDKRSKLRDQERDISELIALGMPNPRSSSEAQYDQRLFNQSKGMDSGFA
GGEDETYNVYDQPFRSGRDMASNIYRPSKNIDKDAYADDLDSLMHNSRFAPGKEFSGADH
GQRREGPVQFEEDPFGLDKFLEEAKQHGGSKRPSTSSRSKDDYHDKKRRKE
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtctctggcgagctttttaccggcgccgacccagctgtctcaagaccagctggaggca
gaggagaggctccgggcccagaagtcctactccactgccctggtttcgtcccacagagag
ccccctccttacggacacagaaaaggctgggtgccccgttcactcgaggactttggagat
ggaggagctttcccagagatccatgtggcccagtttcctctggagatgggcaggaagaag
aagacatccaatgctctggcagtgcaggtggatgcagaagggaagatcaaatatgatgcc
atcgctagacaaggacagggcaaggataaggtggtcttcagtaaatacacagaccttctt
ccaaaggaagttctaaatgaagatagttcagagctacagaggcctgatgaggaggccgtc
aaagagcttacagagaagactcgtgctgccctggaaaagcaggtgtctcagaagattgct
gctgccatgcctgtaagagctgcagacaaacaggctcctgcacagtatatcagatacact
ccatcccagcagggagtagcttttaactcaggggccaaacagagggtgatccgtatggtg
gaaatgcagaaagaccccatggaacctccacgtttcaagatcaacaagaagattcctcgt
ggaccaccctctcctcctgcccctgtcatgcattctccaagcagaaagatgactgtcaag
gagcagcaggagtggaagattcctccatgcatctccaactggaagaatgctaagggctac
accattcctcttgataaacgtctggcagctgatggtagagggctgcaaacagttcacatc
aatgaaaactttgccaagctggctgaggcactctacatcgctgatagaaaggccagagag
gcagtggagatgagagcccaggtagagaagaagatggcccagaaggagaaggagaagaaa
gaggagaaactgagggagctggcccaaatggctcgagaccggagggcagggatcaaaaca
ggtggcgaggacagcgaggccagggagcgtgacgagatccgccatgacagaaggaaagag
agacagcacgacaggaacatttccagggctgctcccgataagaggtccaagctgagagac
caggagagagacatcagcgagctcattgccctgggcatgcccaaccctcgttcctccagt
gaggcccagtacgaccagagactcttcaatcagagcaagggtatggacagtggttttgct
ggcggtgaggacgagacatacaacgtgtacgaccagccattccgcagcggcagagacatg
gcttcaaacatctacaggcccagcaagaatatagacaaggacgcctacgcagatgatctt
gattcactcatgcacaacagccggtttgctccaggcaaagagttctccggtgctgaccat
gggcagaggcgggaaggaccagtccagtttgaggaggatccctttggtctggacaagttc
ttggaggaggccaagcagcatggcggctccaagagaccatccaccagcagccgctcaaag
gatgactaccacgacaagaaacgcaggaaggagtga
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