Lates calcarifer (barramundi perch): 108898108
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Entry
108898108 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor RRN3
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108898108
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
108898108
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRN3
Syntaxin-5_N
SbcD_C
Motif
Other DBs
NCBI-GeneID:
108898108
NCBI-ProteinID:
XP_018553493
UniProt:
A0AAJ7QE47
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Position
LG11:20808119..20815651
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AA seq
610 aa
AA seq
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MEIDGLDFMNSPPVKTVRFGGSVAETLAKYKQGDSSDYELLKHQLADPEIKDAQIISWLQ
EFRSCVTQLNKDHEQLIYTVLRLPWVGRSQAVVEEYMTFLSNLVSAQTVYLCACLKMVVS
HFTPKRVTICEGGVDISDSDDEDENLPRNFDQCHQALQLIARYVPSTSRFLMPILQENFP
FVQKSSRTLECYVHNLLRVTVYIPSIRRDILEVIIGKMLKLDVSASRSDIEEAEENTVQN
QRAAEQTEEGLFDMDEDVAADQPSRTTAMAHPVAERLDTLMAVMMAYIKDVCYVDGSLHV
ERTKELYKDLLGVFDKLILPTHASCHVQYTLFYLCSFRLALAEAFLDHLWKILQSPSQPA
VLRQAAAGFLGSFLARAKFIPLPTVRACLDLLLSWIHRYIDSQDSSGKQACCDISLHGPF
YSACQAVFYTIVFRHRAMLEGNMKKGLEYLQSLNLERVVMCQLNPLKVCLPSVTSMFAAI
TRKYQVVFCYTIIERNSRHMLPVVRSSAGGDGVTTNTNPLDSFFPFDPYLLKRSGQLIEP
LYQVWEELVDVELLPAKTDGQGSKEDEDDFLCGETPQNEGIVGMTPSSYDSNLRSPSSVG
SPPFTFQKPF
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagatagacggtttggactttatgaacagtcctccggtgaagaccgtccggttcggt
ggcagcgttgcagaaacgttagctaaatataaacagggagactcgagtgattatgaactt
ctgaaacatcagctggctgatcctgagataaaggacgctcagatcatcagctggctgcaa
gaatttcgcagttgtgtgacccagctaaacaaggaccatgaacagctcatctacactgtc
ttgagacttccatgggtgggccggagtcaggctgtggtggaggagtacatgaccttcctc
agtaacctggtgtcagcgcagactgtgtacctgtgtgcctgcctcaagatggtggtctcc
catttcactcccaagagagtgaccatctgtgaaggaggagtggatatctctgattcagat
gatgaagatgagaacctcccaagaaactttgatcagtgtcaccaggcgttgcagcttatc
gccagatacgtcccatccacgagtcgtttcctaatgcccattctgcaagagaacttcccc
tttgtacagaaatcctccagaaccctggagtgttatgtccacaacctcctgagggtgaca
gtgtacataccatccattcgacgagacatcctggaagtgatcattggaaagatgctcaaa
ctggatgtgagtgcgtccaggtcagacattgaggaggcggaggagaacacagtgcagaac
cagagggcagcggagcagactgaggagggactgtttgacatggatgaggatgtagcagca
gatcagccctccaggacaactgcaatggcccatccggtggctgagaggctggacacactc
atggctgtgatgatggcttacatcaaggacgtctgctacgttgacggttctcttcacgtg
gagaggactaaggaactgtacaaagatttgctgggggtgtttgacaagctcattctgcca
acgcacgcttcctgtcacgtccagtacacgctcttttacctctgcagcttcagactggcc
ctggcagaggccttcttggatcacctgtggaagatcctgcagagcccctctcagcctgct
gtcctccgccaggctgctgctggattcctggggagcttcctggcccgggccaagttcatc
cctttgcccactgtgcgggcctgtctggacctgctgctctcctggatccatcgctacatc
gacagccaggacagcagcggcaaacaggcctgctgtgacatcagcctgcacgggcccttc
tactctgcctgccaggccgtcttctacaccatcgtcttcaggcacagagccatgctggag
ggcaacatgaagaaaggtctggagtacttgcagagtctgaacctggagcgggtggtgatg
tgccagctgaaccctctcaaagtctgcctgccttcagtcaccagcatgtttgctgccatc
accaggaagtatcaggtggtgttctgctacaccatcatagagaggaacagccgccacatg
ctgccggtggtccgcagctctgcaggtggagacggtgtgaccaccaacaccaaccctctg
gacagcttcttcccctttgacccctacctgctcaagaggtctggtcagctgattgagccg
ctctaccaggtctgggaggaactggtagatgtggagctgcttcctgccaaaacagacgga
cagggctcaaaggaggacgaggatgacttcctgtgtggcgagacaccccagaatgagggc
atcgtgggaatgactcccagctcctatgactcgaacctccgcagcccaagcagcgtgggt
tcaccccccttcaccttccagaaaccattctag
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