Lates calcarifer (barramundi perch): 108898168
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Entry
108898168 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: activity-dependent neuroprotector homeobox protein 2-like
KO
K24878
activity-dependent neuroprotector homeobox protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898168
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
108898168
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ADNP_N
Homeodomain
ICAM1_3_5_D2
zf-DBF
zf-C2H2_4
Actin_micro
Motif
Other DBs
NCBI-GeneID:
108898168
NCBI-ProteinID:
XP_018553572
UniProt:
A0AAJ7QE89
LinkDB
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Position
LG3:11431675..11438782
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AA seq
1000 aa
AA seq
DB search
MYQVPVGSIEKIRKARKAVKNILSEIGLEDCQNLLKDINEKSEKKSDEDEVFQETEWVDF
TDGYSTRQQKKWPYRSRSLCCNLCKYSSQNIYNFRSHVSRCHGYVQSYCALSSCSRCLFI
GHPKVVKKHMLFFHSKHIQPPRDLPLPVHRGNERYQCRRCGFPNSSIFAMKKHIILKHLE
SLAEQYIGYRLHLQGTTSIKVYCCKVCKVNAGNLDQMLHHMLVEPSHYSVSTQVQSMIHE
NKNYTIKPTPNGNGVFVTFPSIAPKPQQPQMFNSKSLVLPSNGQPAGTVVALQQLQGTTN
STTLICAPGTNQAFLPPQASALVQLASAEAKGLLQPGATIALRSTLPQGPSMVQLPTVSN
VSLKQAPVALAQPLFQPQQTPQAQQILVPSGLQANMATGTGAAPKPAVVTQNASTNQITL
QGTMLTSQSLLSHLIPTGNKVNGMPTYTFAPLQLAMPISQSTSTPLKAVEQTSNSLPQTK
KWITCLLCNELFPSNVFDMHTEVAHQTKSPTSKSESVAARAAFLKKMPDKTVKCLTCKIL
LSEKSVFQHLLHGLNCLYCSALFFSIKQLAEHVKQHNPTSKAYCDFLRQKYRVYSKGIGG
ILFPYFDVHTTAPKEVLGDTEVNLALVTNSLDLIFFKLQPSSQPEICPAPVKINSAYCPF
CDEKFENKSKHLQHLKQKHFVAPTIHAILKTEAFKCIYCNGVYTGKVTQQAVMLHIQRCR
CSPKQPQPPPKPAAAAAAAAAAAATAAPPPPPPPPPPPPPPPPPPQQPPKPVQQLSQPSG
LYFLQVPQGLTMKQTLAPARVIQPAPRPEPQESEAEMQSKKRLEAALRQVIEDNKREREE
RAAIRKRREQEKMLPPPEPEVPSDPAVKLLLEPTPTERRCNEERRDFISKYFNLNPYATK
AETDELCKRLGLTKAELAAHFSKKRSKCMKSLKRNSASILLGFNMTELRKLKHSLIVPEQ
QPAEQPPADTTEQMENSEDGPEPMDESGNEKVMNEVEQMQ
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaggttccggtgggtagtattgagaagatcagaaaggcacgcaaggcggtgaaa
aatattcttagtgagatcggcctggaagattgccaaaacctgctgaaggacatcaatgaa
aagtctgagaaaaaatcagatgaagacgaggtctttcaggaaactgaatgggttgatttc
acagatggatacagtacaagacaacagaaaaagtggccttatcggtctcgatctctgtgc
tgtaacctgtgcaagtactcttcacaaaacatctacaacttcaggagtcacgtctctcgc
tgccatggatatgttcagtcatactgtgcactgtcatcctgttctcggtgcctctttatc
ggccaccctaaggttgtcaagaagcacatgctgttcttccacagcaaacatatacaacca
ccaagagatctccctctacctgtccatcgtggaaatgagaggtatcagtgtcgaagatgc
ggatttccaaactcctctatttttgcaatgaagaagcatattattctaaagcacctagaa
agcttggcagaacagtatataggttacagactacaccttcaagggactacgtctataaag
gtctactgctgcaaagtgtgcaaggtgaacgctggaaatctagaccaaatgttgcatcac
atgctggttgaaccatcgcactattcagtcagcacacaagtgcagagcatgattcatgag
aacaagaactacaccattaaaccaacacccaatgggaatggcgtgtttgtgacattcccg
agtattgctcctaaaccacagcaacctcaaatgttcaacagtaaatccttggttttacca
agtaatggccaacctgctgggactgtggtggcattacagcaactacaaggaactacaaac
agtaccactctcatctgtgcccccggaaccaatcaggcttttctgcccccacaagcatcg
gcgctagtgcagctagctagcgctgaggctaaaggtttgcttcagcctggtgctacgata
gccctccgaagtactttgccccaaggaccatctatggtccagcttcccacggtgtctaat
gtgtctctgaagcaggcaccggtggctctagctcagcctctgttccaaccacaacagact
ccacaagcgcagcaaatccttgttccatcaggactgcaggccaacatggctactggaacc
ggggctgcgcctaagcctgctgtggttacacaaaatgcatcaacaaaccaaatcacccta
caaggcaccatgctgacttcacagtctctgttgagtcacctgatccccaccggaaacaaa
gtgaacggcatgcccacatacacttttgctcccctgcaactagcaatgcccatttctcag
agcacaagtactcctcttaaggctgttgagcaaacaagtaactccttaccacaaaccaag
aaatggattacctgtcttctctgcaatgaacttttcccctccaatgtctttgacatgcac
acagaggttgctcaccagacaaaatcacccacatccaagtcagagagtgtggcagcacga
gcggcattcctaaagaaaatgcctgacaaaactgtcaaatgtctaacatgcaaaattctt
ctatcagaaaagagcgtcttccaacacctgttgcacggtctgaattgtttgtactgctca
gcattgttcttctcaatcaaacagctcgctgagcatgtaaaacagcacaaccccacaagc
aaggcatactgtgatttcctgaggcagaagtacagggtctattctaaaggcattggcgga
atcctattcccgtactttgacgtccacaccactgcaccaaaagaggtcctcggagacacg
gaggttaatctcgccctggtcacaaattccctcgacttgatcttcttcaagttgcagccc
agcagccagccagaaatctgccccgcacctgtgaaaatcaacagtgcgtactgtcccttc
tgtgatgagaagtttgagaacaaatccaaacacctccagcacctgaaacagaaacacttt
gtagcacccaccattcatgccatcctcaagacagaggctttcaagtgcatatactgcaac
ggtgtttacacaggaaaggtcactcagcaggccgtgatgctccacattcagcgatgccgg
tgttcaccaaaacaaccacagccacccccgaaacctgcagctgcagcagcagcagcagca
gcagcagcagcaaccgcagcaccaccaccaccaccaccaccacctcctccacctccacct
ccacctccacctcctcagcagcctccaaaaccagttcagcagctcagtcagccatccgga
ctttactttctccaagtgccacaagggctgactatgaaacagactttagctccagctcga
gtgatccagcctgcgcccagaccagaacctcaagaatcagaggctgagatgcagtctaag
aagaggctggaggctgcactgaggcaggtcatcgaggacaacaaacgagaaagggaagaa
agggcggccatacgcaagaggcgagagcaggagaagatgttacccccgccggagcccgag
gtcccaagcgaccctgcggtgaagctgctgctagagcccaccccgactgagcggcgctgc
aatgaggagcgcagagacttcatatcgaaatacttcaacctgaacccctacgcaaccaaa
gccgagaccgacgagctgtgcaagaggctgggcctcaccaaggcggagctggcggcccac
ttcagcaagaagcgcagcaagtgcatgaagagcctcaagaggaactctgcctctattctc
ctcggcttcaacatgactgaattgcgcaaacttaagcacagccttatcgtgccggaacag
cagcccgcagagcagccccctgccgacacaacagagcagatggaaaacagtgaagatgga
ccagaacctatggacgaaagtggaaatgagaaagttatgaatgaggtggaacagatgcag
tga
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