Lates calcarifer (barramundi perch): 108898454
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Entry
108898454 CDS
T04895
Name
(RefSeq) polypyrimidine tract-binding protein 2 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108898454
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108898454
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GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
108898454
NCBI-ProteinID:
XP_018553833
UniProt:
A0A4W6ENP3
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Position
LG24:5772694..5786909
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AA seq
518 aa
AA seq
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MDGISDVAVGVKRGSDELSMYNSPNSGMSSISDGASNGSDSKKLRVEEAPPSRVLHIRKL
PNEASETEVIALGLPFGKVTNILTLKGKNQAFLEMGTEEAAITMVNYYTTVTPHIRNVPV
FIQYSNHKELKTDAGNQRTQAVLQAVSAVQSGGSPSSDVQEALAAASSPVLRIIIDNMFY
PVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLALDGQNIYNSCCTL
RIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPSLDPTVAAAFSKDSNSLLGKIPGALN
PLSAAAAAAAAAGRVALAGQTGSSGVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYN
KKDSSLIQMSDANQAQLAMSHLNGQKMYGKIIRVTLSKHQTVALPRDGLDDQGLTKDYAN
SPLHRFKKPGSKNFQNIFPPSATLHLSNIPQDVTEDDLRLLFSNAGGTVKAFKFFQDRKM
ALIQMSTVEEAIQALIDLHNYNMGGNQHLRVSFSKSTI
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcagtgatgttgcagttggagtgaagagaggatcagacgagctgagtatg
tacaacagtcccaactctggcatgagcagtatcagtgatggggcttccaatggcagtgac
agtaaaaagctcagggtggaggaggcccctccatctcgtgtactccacatcaggaagctg
cccaacgaggcctcagagactgaagtcatcgctctcggcttgccttttggcaaagtcacc
aatatcctcacactaaaggggaagaaccaggctttcttggaaatggggacagaggaggca
gccataaccatggtcaactactacaccacagtaactcctcatatccgcaatgtccctgtc
tttattcagtactccaatcacaaagaactcaaaactgatgctggaaatcagcggacccag
gcagtgctgcaggcggtgtcagcagtccagtctggtgggtcaccgagctcagatgttcag
gaggctcttgctgcagcctctagtcctgtgctgcggatcatcattgacaacatgttctac
cctgtaacgctggatgtactgcaacagattttctccaagtttggtacagtcatgaagata
atcacatttaccaagaacaatcagttccaggctcttctacagttcagtgatcctgtcaat
gcacagcaggccaaactggcactggatggccaaaacatctacaactcatgttgcacactg
cgtattgacttttccaagctggttaacctaaatgtcaagtacaacaacgataagagtcgt
gactacacgcgaccagagcttcctgctggtgacggccagcccagccttgaccccacggtg
gccgctgccttcagcaaagactccaactccctcctcggtaagatcccaggagccctgaac
cctctgagcgcagcagcagcggctgccgctgctgcagggagggtggccctagctggacag
acagggtccagcggggtcctgctggtcagcaacctcaacgaggagatggttacgccccaa
agtctgtttaccctcttcggagtgtatggggatgtccagagggtgaaaattctgtacaat
aagaaggacagttctctcattcagatgtcagatgccaaccaggcccagctagcaatgagc
cacctgaatggccaaaagatgtacgggaagataatccgggtgacgctgtcaaagcatcag
acagtggcactgcctcgcgacggcctggacgaccagggcctgaccaaggactacgccaac
tccccgcttcatcgcttcaagaaacctggatccaaaaatttccagaacatcttcccacct
tctgccaccctccacctctccaacatcccacaagatgtaacagaggatgacctgcggctg
cttttctccaacgccggtggcactgtgaaagctttcaagtttttccaggatcgcaaaatg
gctttgatccagatgtcgacagtggaggaggctatccaggccttgatcgaccttcacaac
tacaacatgggaggcaaccagcacctgagagtctccttttcaaagtccactatttga
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