Lates calcarifer (barramundi perch): 108898647
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Entry
108898647 CDS
T04895
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108898647 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108898647 (ddx5)
03009 Ribosome biogenesis [BR:
lcf03009
]
108898647 (ddx5)
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108898647 (ddx5)
Spliceosome [BR:
lcf03041
]
Complex A
U1 snRNP components
U1 related factors
108898647 (ddx5)
Complex B
108898647 (ddx5)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
108898647 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108898647
NCBI-ProteinID:
XP_018554121
UniProt:
A0AAJ7QEQ7
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All DBs
Position
LG11:complement(17467726..17473394)
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AA seq
620 aa
AA seq
DB search
MPGYSDRDRGRDGGRDRGYGGGPPRFGGNRGGGGGKFGNPGDRLRKKHWNLDELPKFEKN
FYQQHPDITRRSPQEVEQYRRSKAITVKGRECPYPITKFSEASFPSYVMDVINKQNWTEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQMAED
RGGRSRGGRGGDYRDDRRDRYSSGRRDFGSFRDRDNGRGFDNGPNKAFGTNTQNGGYGGS
NSSTNGFSGGSYNGNGQSNFSNNQTAFGAQNNFQAQQFAPAKAATQNGTSHPPFPFPQAQ
APQQHPPPLVPYPMPPQFSQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattctgacagagaccgcggcagagatggtggacgagatagaggctatggc
ggtggtcctcctcgctttggtggcaaccgtggtggaggtggaggaaagttcggcaatcct
ggcgatcggctgcggaaaaaacactggaacctggacgagctcccaaagttcgagaaaaac
ttctatcagcagcatcccgacattacccggaggtcgccgcaagaagttgaacaatacagg
aggtccaaagcaattacagtgaaggggagagaatgcccatatcccatcaccaagttcagt
gaggccagctttccatcctatgtgatggatgtgatcaacaaacaaaactggactgaacca
acgcccatccaagctcagggatggcctctggctcttagtggcaaggatatggtcggcatt
gcccagactggatctggcaaaaccctttcttatctgctgcctgcgatcgtgcacatcaac
caccaacctttcctggaacgtggagatggtcctatttgcttagtgctggccccaacccgt
gagctggcacagcaggtgcagcaggtggctgcagaatatggcagagcttctcgcctcaag
tctacctgtatctacggaggagcacccaaaggaccgcagatccgtgacctggaaagaggt
gtggagatctgcatcgctactccaggcaggctcattgacttcctcgaggcaggaaagaca
aacctccgccgatgcacttaccttgtgctggatgaggcagacagaatgctggacatggga
ttcgagccacagattcggaaaattgtagaccagatcagacctgaccgtcagactctgatg
tggagtgccacatggccaaaagaggttcgccagctggcagaggacttcttgaaggagtac
gtccagatcaatgttggggcactgcagctcagcgcaaaccacaacatcctgcagatagta
gatgtctgcaatgatggagagaaggagaacaaactgatccgtctgcttgaagaaattatg
agtgagaaagagaacaagaccatcatctttgtagaaacaaagaggcggtgtgatgacctc
accaggaggatgagacgggatgggtggcctgctatgggaatccatggagataaaagccag
caggaaagagactgggttctcaatgagttcaaatatggaaaggctccaattctcatcgct
acagatgttgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaactttgac
taccccaacaactcagaggactatatccaccgcattggcagaacagctcgtagccaaaag
acaggcacagcttataccttcttcactccaaacaacatgaggcaggccagcgacctcatc
tctgtgcttcgtgaggccaaccaggcaatcaaccccaagctcctccagatggctgaagac
agaggaggtcgttcaaggggaggcagaggtggagattatagagatgatcgtcgtgatagg
tattcctctggaaggcgcgattttggcagttttagggacagagataatggtagagggttt
gacaacggaccaaacaaagcctttggcacaaatacacagaatggaggctatggtggcagt
aacagcagcaccaacggcttcagcggtggcagctacaacggtaacggacagtccaacttc
agtaataaccaaacagcgttcggagcccagaacaacttccaggctcagcagttcgctccc
gctaaggctgccacacagaacggcaccagtcacccccctttccccttcccccaggcacag
gctccacagcagcatcccccaccgctggtgccctaccccatgcctcctcagttctctcag
taa
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