Lates calcarifer (barramundi perch): 108898660
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Entry
108898660 CDS
T04895
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108898660 (ddx39ab)
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108898660 (ddx39ab)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108898660 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
108898660
NCBI-ProteinID:
XP_018554142
UniProt:
A0A4W6EIJ4
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Position
LG11:complement(18154353..18159241)
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AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQGAPESAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILSMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLAIKKDEEVLKKNCPHIVVGTPGRILALIR
NKSLSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRITPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCI
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaatgatgttgataacgagctgctcgattacgaagaagatgaagagccgcaa
ggagcccctgagagcgcagcccctgcaggcaagaaggaggtgaagggttcttacgtttcc
atccacagctctggcttcagggatttcctgctcaaaccagaactgctccgtgccatcatt
gactgtggttttgagcatccgtctgaagtccagcatgaatgcatcccacaagctatcctg
agtatggacatcctgtgccaagccaaatctggtatggggaagacagctgtgtttgtactg
gccacactgcaacagattgaaccggttgacggacaggtgtctgtattagtcatgtgccac
acacgagagctggctttccagatcagtaaagagtatgagcgtttctccaagtacatgccc
acagtaaaagcagcagtgttctttggtggcctggccatcaagaaagacgaggaggtcttg
aaaaagaactgccctcacattgtcgtcggaacgccgggccgtatcctcgccctcatccgg
aacaagtccctcagtctcaagaacgtgaagcattttgtcctggatgagtgtgacaaaatg
ttggagcagctagacatgaggcgtgatgtacaggagatcttcaggatcacaccccatgag
aagcaggtcatgatgttcagtgcaactttgagcaaggagatccgaccagtctgccgcaaa
ttcatgcaggatcccatggaagtatttgtggatgatgagaccaaacttacactccacggc
ctgcaacagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctc
cttgatgttttggagttcaaccaggtggtgatctttgtcaagtcagtccagcgctgcatc
gctctgtcccagcttctggtggaacaaaatttccctgccattgccatccacaggggaatg
gctcaggaggagagactgtctcgctatcagcaattcaaggacttccaaaggcggatcttg
gtggcgactaacctttttggcagggggatggacattgagcgagtcaatatcgtcttcaac
tacgacatgccagaagattctgacacctatctgcacagggtcgcccgtgctggtaggttt
gggaccaaaggcctggctataacctttgtgtctgacgagaccgatgccaagactctgaac
gatgtgcaggaccgctttgaggtcaacgtggctgagctgcctgatgagattgacatctcc
tcttacatcgagcagtccagatga
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