Lates calcarifer (barramundi perch): 108898690
Help
Entry
108898690 CDS
T04895
Symbol
usp43b
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 43 isoform X1
KO
K11856
ubiquitin carboxyl-terminal hydrolase 43 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108898690 (usp43b)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108898690 (usp43b)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108898690 (usp43b)
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108898690 (usp43b)
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108898690 (usp43b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
TetR_C_13
Motif
Other DBs
NCBI-GeneID:
108898690
NCBI-ProteinID:
XP_018554191
LinkDB
All DBs
Position
LG11:complement(17597377..17659629)
Genome browser
AA seq
1228 aa
AA seq
DB search
MERQSRVKEEMPTSKEEKRKEKKPKSGKLFRKKPLKSVGSFMNRIIKTLGTFTHFGDTDA
QDAEDDDGGFRNGAPCTLSASSGIIKEDVQVAWERVVKNTSSTSSSLCTGREKLLYQYGD
KIPGVLGLKNHGNTCFMNAVVQCLSNTDLLAEYLGLERYKLDLCQTRINGVVRSEETRLA
KGEVTEQLASLVRALWTLEYTPQLSVDFKTIVSKYGSQFRGNSQHDALEFLLWLLDRVHE
DVNLASHNNNNMTKAPGKGPGGPEEAPSPDPSQSQQPRVQHSFVQEHFQAQYKSSLTCPH
CLKQSNTFDPFLCISLPIPLRQTRPLCVTLVFSTKGQRYLRVGLAVPLFGSVACLRRMVA
DEGKISPDQVILTEVYSTGFQRSFFDEDELTSIAENDVIYAFQAPPLYIRGGSARISGYH
HSLPSSPYSTGPEGQRLPSSGTLSSEFLNQGVPVKILLLVCNAAGGGQQAVRFGPPFLMR
EDRSISWDQLQQSILSKLYYLMINGAQAQNTRVLFNIRVVGGSAFYSYLSPQDGRPLYHP
AVDRALKLCGSGGPPHVKLIIEWEHRIKDCLFGNIQEEVVKDAESVRNQQQQHVQQYSCT
LDECFQLYTKEEQLAPDDAWKCPHCKQLQQGMVKMSLWTLPDILILHLKRFRQVGERRNK
LTTFVHFPLAGLDMTPHMVNRNHGAHQVSLQPGWKQSRRPDLAPPDFLYDLYAVCNHHGG
MHGGHYTAFCRNSVDGQWYSYDDSSAEPVPEGEVCTRGAYILFYQRRNTIPPWSASSSVT
GSTSSSTSDHWLVRLTGGSKRGSVVSGGPIPGPPGPTQAPDSPELPVFGDEPPKTVETNG
FEAKPFVRGTQGRSVSMRSPTKPKETLGKVLPLRWSFGSKDRIKHPAQAQPGELVEYLES
GRRPRCTKDPIITLVATPPQRTAQGRAFDVGQDCSSPSGSSLSCTDRPSSDTCYSPKIPE
GQSRPCAERNISQGVSSSSNIKARDDGSLRQRSSKRARQDQGRTLDLQLQRGAILGGHIS
HSAPPSRDSTLRRTKVQTGVPPRAQKDLLQMVIHPEDRRGQRGQEGRSHDSLLSFFKPGF
MKKDIPRSPVKGHDRRMDGHGQLEKLASSNLAKLSLSNGMLTTVVLEERKAGVIPSCDNH
NCKVQLLNGKAGNHDPVDIQRAHSSSNIQTKLDLTFRRCASLQRNGEIVVPPAHRILLSD
KPSYATLQRTRYSTTSLGRNRPVPEDCF
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggagagacagagcagagtcaaggaggaaatgccgacatcgaaggaggagaagcgcaaa
gagaagaagccgaaatctgggaagcttttccgtaagaaaccgttgaagtctgtggggagt
tttatgaacagaatcatcaaaactttgggcactttcacccactttggagacacggacgcg
caggacgctgaggacgacgacggggggtttcggaatggagcaccttgcaccctcagcgcc
agctcaggaattatcaaagaggatgtacaggtggcttgggaacgagtagtgaaaaacact
tcgagcacgtcttcctctctgtgcaccggcagagagaagctgctctaccagtacggagac
aaaatcccaggtgttctggggctgaaaaaccacgggaacacctgcttcatgaacgccgtg
gtccagtgtctgagcaacaccgacctgctcgcagagtacctggggctggagcgatacaag
ctggacctgtgtcaaaccagaataaacggcgtggtgaggagtgaggagacgcggctcgcc
aagggagaagtcacggagcagttggcatcacttgtccgggctctgtggactctggagtac
acaccacagctgtctgtggacttcaagactatagtgtccaagtatggatcacagtttcgt
ggtaattcccaacacgacgccctggagttcctcctgtggctgctggaccgcgtccacgaa
gacgtcaatctggcctctcacaataacaacaacatgaccaaagcccctggaaagggcccc
ggtggacccgaagaggcaccgtctcctgacccgtcccagtcccagcagccccgagtccag
cacagctttgtccaggaacatttccaggcccagtacaaatcttcattgacatgcccccat
tgtctgaaacagagcaacacctttgaccctttcctctgcatctcactccctattcctctt
cgccagacaaggcctttgtgtgtgactctggtgttcagcaccaaaggacagaggtacctg
cgggtcgggctggccgtgcctctgtttggctctgtggcttgcctgaggaggatggtggct
gacgaggggaaaatttctccagaccaggtgatcctgacggaggtctactccacagggttt
cagcgctccttctttgatgaagacgaactaaccagcatagctgagaatgatgtcatctac
gccttccaggctccgcccctctacatcagaggaggctcagcacggatctcagggtaccat
cacagcctgccatcgtctccatactccactggtcctgagggtcagaggttaccttcatca
gggacgttgtcatcagagttcctcaaccagggcgtcccagtcaagattctgctgttggtg
tgcaatgctgcagggggaggccaacaggctgtgaggtttggacctccatttctaatgagg
gaggaccggtctatttcctgggaccagctgcagcagagtatcctcagcaaactttattat
ctgatgatcaatggcgctcaagcacagaataccagagtgctgttcaacatccgcgtggtg
ggaggatcagcattttacagctacctgtcacctcaggatggacggcccctctaccaccct
gctgtcgacagagctctgaagctgtgcggctcaggaggacctccacatgtgaagctcatc
atcgagtgggagcacagaatcaaagactgcctgtttggtaacattcaggaggaggtggtg
aaagatgcagagagtgtgagaaatcagcagcagcagcacgtccaacagtacagctgcacc
ttggatgagtgcttccagctctacaccaaagaggaacagcttgccccagatgacgcctgg
aagtgcccgcactgtaagcagctgcagcaggggatggtgaagatgagcctgtggacactg
ccggacatcctcatcctgcacctgaagcgcttcaggcaggtgggagagcggaggaacaag
ctcaccacgttcgtgcatttccctctggcgggcctggacatgacgcctcacatggtgaac
cgcaaccacggcgcccatcaggtctccctccagcctgggtggaagcagtcccgacgaccc
gacttggctccccctgacttcctgtacgatctgtatgctgtgtgtaaccaccatggagga
atgcatggtggacattacacagccttctgcaggaactcagttgatggccagtggtacagc
tatgatgacagcagtgctgagccggttccagaaggggaggtgtgcacacgtggagcctac
atcctcttctatcagagaagaaacaccatccctccctggtctgccagttcctcagtcact
ggttccaccagctcatccacctctgaccattggctggtccggctaacagggggaagtaag
aggggcagtgtggtgtcaggaggaccaatccccggacccccagggcccacacaggcccca
gattctcctgagctgccagtgtttggagatgagcctcccaaaacagtggaaacaaatggg
tttgaagctaagccatttgtccgtgggacccaaggcaggagtgtcagcatgagatcacca
actaagcccaaggagactctgggcaaagttctgccactacggtggtcctttggctccaag
gaccgcattaaacacccagcccaggcccagcctggagagctggtggagtacctggagtct
gggcgccggccacgatgtaccaaagaccctatcattacactggtggccacgccaccacaa
aggactgcccagggaagagcctttgatgtaggacaggactgcagctcacctagtggcagc
agccttagctgtacagacagacccagctctgacacttgttactcccctaaaataccagag
ggacaaagcagaccttgtgcggagagaaacatcagccagggagtcagtagcagcagcaac
atcaaagccagagatgatggttctctgaggcagaggtcatctaagagagcgaggcaggac
cagggcaggaccctggacctccagctgcagagaggagccattctagggggtcatataagt
cacagtgcacctcctagcagagactccaccctgagaagaaccaaggtccagacaggggtg
ccccccagggcacaaaaagacttgttacagatggtcattcaccctgaggacaggagaggg
cagaggggacaggaaggtcgcagccacgacagcctcttgtcttttttcaaacctggtttc
atgaagaaagacattcctaggtcaccagtaaaggggcatgataggcgtatggatggccac
ggacaactggagaagctggcaagcagtaatttagccaaactgtccctctccaatgggatg
ttgaccacagtggtactcgaagagaggaaggctggtgtcatccccagctgtgacaaccat
aactgcaaagtacaactattgaacggaaaggctggaaatcacgaccctgtggacatacag
cgcgctcacagctccagcaacatccagacaaagctggacttgacatttcgcaggtgtgcc
tccctgcagaggaatggcgaaatagtggttcctcctgcccaccgcatcctgctgtcagac
aagcccagctacgccactctgcagcggacacgatatagtaccacctccctgggtaggaac
agacctgtccctgaggactgtttttga
DBGET
integrated database retrieval system
