Lates calcarifer (barramundi perch): 108898754
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Entry
108898754 CDS
T04895
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108898754
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108898754
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
108898754
NCBI-ProteinID:
XP_018554298
UniProt:
A0A4W6DHT2
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Position
LG15:8158395..8165815
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AA seq
626 aa
AA seq
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MDQVLPSQSSASDQLEPDSEKLQLRVDFFRKLGYSSAEVKAALKKLGLSTDTNSVLGELV
RSRTSTASCKSSSDSDERSSGQKDPLMPASWLSGPRITPQLGDPKNTDTELRPVVIDGSN
VAMSHGNKEVFSCRGIQLAVNFFLDRGHNSITVFVPTWRKEQPRPDAPITDQHILMELEK
RKIVVFTPSRRVGGKRVVCYDDRFIVKLAYESDGVIVSNDTYRDLQGERPEWKKCIEERL
LMYSFVNDKFMPPDDPLGRHGPSLNNFLRKKPLPTEQKRQLCPYDKKCTYGIKCKFYHPE
RTNQSYLSLADELREKAQISTVKEERNARLSPRQSDTGSAHNACPHPRDSNTELIRDRQS
SSHPCHVGENKVVYWEDPRNSSNHMPCSVTGGQCQKDWPGLHSVPNHYYANISHEYLDSG
LGSFESQYSDNSHCLSNSQRLRSQQQSSLAGPRHTSVHLGKNYISHSCSCCSHAVPSTAH
QHHRNMDSKGQPNYPPHMFPPSVPHHHSLPSHVHYSGAPHHQQNYWSDPFQGLPQARTSC
SLSSSVHSSHSHNSCSCSYKGHEYHPWGQQPSSAAFDPQRLELRKKLQAIFNPHEVDTVM
EMFPHLMDAEKLAAKILNLKTQRGIF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggtacttcccagccagagctcagcttcagaccagctggaacccgacagcgag
aagctccagctcagagtggacttctttaggaaactgggttactcctcagcagaagtaaag
gctgctctgaagaagctgggtctcagcacagacaccaactcagtgctgggagaactggtc
aggagcaggaccagcactgcatcctgcaagtccagttctgacagtgatgagaggagctca
ggccaaaaggaccctctgatgcctgccagttggctctctggacccagaatcacaccacaa
cttggggacccaaagaatacagacacagaattgagacctgttgtcattgacggtagcaat
gttgcaatgagtcatggaaacaaggaagtgttctcctgccgaggcatccagctggcagtg
aatttcttcctggacagaggtcataatagcatcactgtgtttgttccaacttggcgcaaa
gagcagcccagacctgatgcccccataacagatcaacacattctgatggagcttgaaaaa
cgtaaaatagtggtcttcactccatcgcgtcgagttggtggtaagcgagtggtttgctac
gacgaccgcttcatcgtcaaattggcgtacgagtcagatggcgtgatcgtatccaatgac
acctaccgtgacctccaaggagaaagacctgagtggaagaaatgcatcgaagagaggctc
ctcatgtattccttcgtgaatgacaagttcatgcccccggatgaccctcttggacgccat
ggccccagtctcaacaacttcctaaggaaaaagcctctgcctacagagcagaagagacag
ctctgtccatatgataaaaagtgcacttacggcatcaagtgtaagttttaccatccagag
cgaaccaaccagtcctacctgtccttggctgatgaactgagggagaaagcccagatttct
actgtaaaagaagaaagaaatgccagattatcacccagacagtctgatactgggtctgct
cataatgcttgtccccatcctcgagactctaacacagagctcattagagacaggcaaagt
tcttcacatccctgtcacgttggtgaaaataaagtggtatactgggaggacccaagaaac
agttcaaatcatatgccctgctccgtaacaggaggccagtgtcagaaagattggcctggg
ctgcactcagtgcccaaccattactatgccaacatctctcatgagtacctggattctggt
cttggctcttttgagagccagtactctgataattctcattgcctcagcaactcccagagg
ctcaggtcccagcaacaaagttccctcgctggacccagacacacctcagtgcatttaggg
aaaaattacatcagccactcctgtagttgctgttcccatgcagtgccctcaacagctcac
cagcatcacagaaacatggattctaagggtcaacccaactatcctcctcacatgttccca
ccaagtgtgccacaccaccacagcctccccagccatgtccattatagtggagccccccat
catcagcaaaactactggtcagatccctttcaagggctgccccaagccaggacatcatgt
agtctgtcctcttcagtccattcgtcacactcccacaactcttgctcttgctcttacaaa
ggccatgagtaccatccatggggccaacagccatcttctgctgcgttcgaccctcaaagg
ctggaactccgcaagaaactgcaagccatcttcaacccacatgaggtggacacagtcatg
gaaatgttcccacatctgatggatgcggagaaactggctgcaaagatcctcaacctaaag
actcagagagggatattctga
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