Lates calcarifer (barramundi perch): 108898882
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Entry
108898882 CDS
T04895
Symbol
cntn4
Name
(RefSeq) contactin-4 isoform X1
KO
K06762
contactin 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108898882 (cntn4)
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Contactins
108898882 (cntn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_C17orf99
V-set_CD47
Sp38
Ig_5
Ig_4
Pur_ac_phosph_N
Tissue_fac
C2-set_2
C2-set
Herpes_gE_N
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
108898882
NCBI-ProteinID:
XP_018554516
UniProt:
A0A4W6FM37
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Position
LG12:complement(12580741..12735484)
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AA seq
1029 aa
AA seq
DB search
MMLLWKLLVLQSLMGCLAESSVLQSLAFTKQPGSIVYPVETLERNREVVFSCEAQGSPPP
IYRWKLNGTEISHKSGSHYSLSGGNLRISHLNKDQDAGTYQCLAANSFGTIVSREASLTF
AYLENFKTHRRSSVSVREGQGVVLLCGPPPHSGDLIFSWIFNEYPSFVKQDTRRFISQET
GNLYIAKVEPSDVGNYTCVVTNTVTKTRVQGPPTPLVLRSDGVMGEYEPKIEVQFPDVVH
VAKGSTVKLECFALGNPVPSINWRRVDSVPFPRKVDMRKASGVLEIPYFQQEDAGTYECV
AENSRGMNTVKGKLSFYAPPHLIEKPQDVQKLIDDSLVWECKATGKPKPSYRWMKNGENL
ESAEERIQVANGALSISRLTLSDTGMYQCVAGNKHGEVYSNAELQVIAVAPDFSHNQLRS
QTLVKVGGDVLIECRPKMSPWGVISWRKGSEPLRESSRVSILDNGNLRIWNATKSDAGLY
TCVARNQFGVASSTGSITIKEPTVITTLPSTLDVSVGESVVLPCQVSHDPSLELKFTWFF
NEQLIHFGSHSGFFEKVGGQHSAGDIMIRNIQLKHAGKYTCAVQTKVDSISIAVDLVVRG
PPGPPTSIHVVEITDTTATLSWRPGPDNHSPITAYTIQARTPFSLGWQAVTTVPEVVGGH
RLTATVIDLSPWVEYEFRVLASNTIGTGEPSKPSKQARTKGTFPKVTPANVSGGGGSRSE
LVITWEPVPEELQNGPGFGYVVAFRPHGATGWMQAAVPSAEASKYVFKNESIQPFSPFHV
KVGVYNNEGEGPFGPVTTIYSAEEEPGRAPTRVRSKSLSASEIEVSWKALPWNASKKRVL
GYELRYWSRSEREDTASVQRTVGNQTSTIIRGVKGSTTYYISVRAYNTAGTGPPSSTVNV
TTKKPPPSQPPVKVMWNASNSKIILNWEQVKALENESEVTGYKVLYKKNRHSRPNVMETN
TTSVELALPTDEDYIIQIKPFGEGGEGSSSRQITIPRIPGPNAVGSASKVSTLSALSTIA
LSFTARTSL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgctatggaaactgctggtgctacagtcacttatggggtgccttgcagagagc
agtgtcctgcagagtcttgctttcaccaagcagcccggcagcatcgtgtaccctgtggaa
accctggagaggaacagggaggtggtgttcagttgtgaagcccaaggaagcccacctccc
atctaccggtggaaactaaatggcacagaaatcagtcacaaatctggatctcactacagc
ctttctggaggcaacctcagaatcagccatctgaacaaagaccaagatgctggaacatat
cagtgcctcgccgccaattcttttgggaccatcgtcagccgagaggccagtctaaccttt
gcatacttggaaaacttcaagactcacagaagaagctctgtctcagtccgtgaaggtcaa
ggagtggttctgctgtgcggccctccaccacattctggagatctgatattttcctggatc
tttaatgaatacccatcatttgtgaaacaggatactcgtcgcttcatctcacaggaaaca
ggaaatttgtacatcgccaaagtggagccctcagatgttggcaactacacttgtgtggtg
accaacacagtcacaaagaccagagtccagggtccacccactccactagtgctccgcagt
gatggtgtgatgggtgaatatgagccaaagattgaagttcagtttccagacgttgttcat
gttgccaaaggatccactgtaaagctggaatgcttcgctctgggaaacccagtgccctct
ataaactggaggagagtggacagtgtgccgttccccaggaaagtggacatgaggaaagcc
agtggtgtcctggaaatcccatatttccagcaggaggatgctggcacgtatgagtgtgtg
gccgagaactccaggggaatgaacacagtcaaaggaaagctctctttctacgcccctcct
cacctcattgagaaaccccaagatgtgcagaagctcattgatgactcgctagtgtgggag
tgcaaagccacagggaagccaaagccttcttacaggtggatgaaaaatggagagaaccta
gagtctgctgaggagcgtatacaggttgccaatggggcgttgtcaatcagccgcctgacc
ctgtctgacacaggaatgtaccagtgtgtggctgggaacaagcatggcgaggtctactcc
aacgcagagctccaagttatagctgttgccccagatttctctcacaatcaactgaggagc
cagacgctggtgaaggtaggcggagatgtgctcatcgagtgcaggcctaagatgtctcct
tggggtgtgatctcttggcggaagggcagtgaaccactccgagaaagtagcagggtctct
attctggacaacggtaatcttcggatatggaatgcaaccaaatccgatgcaggcctctac
acctgtgtggcaagaaaccagtttggtgtggcaagcagcacaggaagtatcacaattaaa
gagccgaccgtcatcaccaccctgccatcaacactggatgtcagtgtcggggagagtgtg
gtcctgccctgtcaagtgagccatgacccatctctggagctcaagttcacttggtttttc
aacgagcagctcatccactttgggagccacagcggattttttgaaaaagttggaggtcag
cactcggcaggagacattatgattcgaaacatccagctgaagcatgcaggaaagtacacg
tgtgccgtgcaaacgaaggtggacagtatctccattgctgttgacttggttgtcagaggt
cccccgggcccccccaccagcattcatgtagtagaaatcactgataccacagccactctg
tcctggaggcctggtcctgataatcacagtccaattacggcatacaccatccaggccagg
acaccattttccctcgggtggcaggctgtcaccacagttcctgaagtggtggggggccac
cggctgacagctacagtaatagacctgagcccttgggtggagtatgagtttcgagtcctg
gcaagcaacaccatcgggaccggcgagcctagcaagccatccaaacaagcaaggacaaag
gggacctttccgaaggtcacaccagctaatgtgagtggaggcggtggcagtcgctctgaa
ttagtcatcacatgggagcctgttccggaggagctgcagaatggaccagggttcggctac
gttgtggcttttcgaccccacggtgccacaggatggatgcaggctgccgtaccatccgct
gaggcatccaaatacgtctttaaaaatgagagcatccagcccttctcaccttttcacgtg
aaggtcggggtttacaacaatgagggggaagggccgtttggacctgttaccacaatctac
tcggcagaggaagagcctggccgagcacccactagggttcgttccaagagcctttctgca
tctgagattgaagtttcatggaaagctctgccctggaatgccagcaagaaaagagtgctg
ggctatgagctgaggtactggagtagaagtgaaagggaagacacagccagcgtgcaaagg
actgtaggaaatcaaacgtctactattatccgcggggtgaaaggcagcaccacatattac
atctcagtgagggcgtataatactgctggaacggggcctcccagctccactgtgaacgtt
accaccaaaaaaccaccacccagtcagcccccggttaaagtgatgtggaatgcatcaaac
tccaagattatattgaactgggagcaggtcaaagccctggagaatgagtcagaggtcaca
ggttacaaagtgctctacaagaagaaccgacacagccgccccaatgtcatggaaaccaac
accacctctgtggagctcgccctgcccactgatgaggattatatcatccagataaagcca
tttggagagggaggggaaggcagcagtagcaggcagatcaccatcccaaggataccaggc
cccaacgcagtcggctcagcatccaaggtctccactctatcagcactcagtacaatagca
ctctctttcacagcgcggacatctttatga
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