Lates calcarifer (barramundi perch): 108898936
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Entry
108898936 CDS
T04895
Name
(RefSeq) probable nuclear hormone receptor HR38
KO
K04465
nuclear receptor subfamily 4 group A member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108898936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898936
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108898936
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 nerve growth factor IB-like
108898936
Nuclear receptors [BR:
lcf03310
]
4. Nerve growth factor IB like
4A. Nerve growth factor IB like receptor
108898936
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
108898936
NCBI-ProteinID:
XP_018554598
UniProt:
A0A4W6FVQ8
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Position
LG12:complement(20244067..20250267)
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AA seq
591 aa
AA seq
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MPCVQTQYASLPHDTYFSSEFLNPDLSAKLVMDISGQKDQLSTSSLPSINTLVGNGYVGE
FDAYSCKITTSPPASTVPFNHTAVAESSGPQMQNQAFRLDDLQVYGCYPGSFALSCLDET
LSSCGSDYYGSPVYAATSPPTPGFQAQSAPVWDSPFSPYPSAPPSSVADKAAMAQQLSFF
TFSPTPEQHSPLAHHQDAQPGQEDPFFLPHQQHVSPLHCPPISLEHGPLETPRIAEGAMT
SPKNHNPGSSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVDK
RRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKTVAEASSTTPSVNIISSLV
RAHLDSNPTIGKLDYSKYQETVDNLKEKEDAGDIQQFYDLLTGALDVIRNWAETIPGFTD
FCTEDQELLLESAFVELFILRLAYRSNPEKNKLIFCNGVVLHRLQCVRSFGDWIDSIMDF
SHSLHRMNLDVSLFACLAALVIITDRHGLKEPKRVEDFQNHLITCLREHVSGNGSEPSRT
QPNYLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIVEKIFMDTLPF
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgccctgtgtacaaacccaatatgcatccctgccccatgacacctacttcagctctgag
tttttgaatcctgacctcagtgccaaactggtgatggacatcagtggccaaaaggaccag
ctgtctacatcttcattgcccagcatcaacactttggtgggaaatggctatgtgggcgag
tttgatgcttattcctgcaagattaccacctctcctcccgcctctacagttccattcaat
cacactgcggtagctgaaagctctggccctcagatgcagaaccaggccttcaggctggat
gatctccaggtgtatggctgttacccaggctcctttgcactcagctgcctcgatgaaaca
ctgtcatcatgtggctcagactactacggcagcccagtttacgctgctacttctcctcca
acgccaggctttcaggcccagtctgcacctgtctgggattcccccttcagcccctacccc
tcggcccctccctcctctgtggccgataaggccgccatggctcagcaactctcctttttt
accttcagccccacaccagagcagcactctcccttggcgcatcatcaggatgctcagcca
ggccaggaagacccattcttcttgcctcaccagcagcatgtctctccacttcactgtccc
cccatatccctggagcatgggcctctggaaacccccaggatagcagagggggccatgact
tctcctaaaaaccacaacccagggtctagtgagggccgctgtgcagtttgtggcgacaat
gcatcttgtcagcactatggagttcgcacctgcgagggctgcaaaggcttcttcaagaga
actgtacagaaaaatgcaaagtacgtgtgccttgccaataaagactgtcctgtggacaag
aggaggagaaaccgttgccagttctgtcgtttccagaaatgtcttgcagtgggaatggtc
aaagaagttgttcgcacagacagcctcaaaggtcgccggggtcgcctgccctccaaaccc
aagaccgtggctgaggcttcatccacgacccccagtgtcaacatcatatcatctcttgtc
agggcacatctagactcaaacccaaccattggaaagctggactactccaagtaccaggag
acagtggacaacctgaaagaaaaggaggatgctggtgacatccagcagttttatgacctg
ctgacaggtgccttggatgtgatcagaaactgggctgaaaccatcccaggattcacagac
ttctgcacagaggaccaggagctccttcttgaatctgcctttgttgagctcttcatcctc
cgtctagcatacaggtcaaatccagagaagaacaagttaatcttctgcaacggtgtcgtc
ctccaccgactgcagtgcgtccgcagtttcggcgactggattgattctatcatggatttc
tcccacagtcttcatcgcatgaacttggacgtttcattgtttgcctgccttgcagcgctt
gtcatcatcactgatcgccatggcctcaaggagcccaaacgggtcgaggactttcagaat
catctcatcacttgtttgagggaacacgtgagtggaaacggatcagaaccgagcaggacc
cagcccaactatctctcgcgtcttctgggcaaactccccgagctgaggactctgtgcaca
caaggcctgcagcgtatcttttacctgaaactggaggacctagtcccccctccaccgatt
gtggagaaaatctttatggatactctgccgttctaa
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