Lates calcarifer (barramundi perch): 108898992
Help
Entry
108898992 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-2-like
KO
K04659
thrombospondin 2/3/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108898992
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108898992
09144 Cellular community - eukaryotes
04510 Focal adhesion
108898992
09142 Cell motility
04820 Cytoskeleton in muscle cells
108898992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108898992
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108898992
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108898992
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Opsonins
108898992
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108898992
Exosomal proteins of colorectal cancer cells
108898992
Exosomal proteins of bladder cancer cells
108898992
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108898992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
EGF
TSP1_CCN
TSP1_ADAMTS
Motif
Other DBs
NCBI-GeneID:
108898992
NCBI-ProteinID:
XP_018554700
UniProt:
A0AAJ7VHV2
LinkDB
All DBs
Position
LG23:complement(13298558..13311323)
Genome browser
AA seq
1251 aa
AA seq
DB search
MQGMSPLRGFPWLLICLFAAAVCAGVGGAKVDNVSSEICRHPCEELVALITEIHGLRIVT
SSLLEDLERVSRENEEMRISLADLSSSSSNSGYRHNGNSNSSSRNNGNSNSNSRNNGNSN
SNSRNNGNSNSNSSNSRNNGNSNSSSRNNGNSNSNSRNNGNSNSNSSNSKNNGNSNSNSS
NSRNNGNSNSNSSNSRNNGNSNSNSSNSRNNGNSNSNSSNSRNNGNSNSNSRNNGNSNSN
SRNNGNSNSNSSNSRNNGNSNSNSRNNGNSNSSSRNNGTRISGSRNNGYSNNGHSNNGYS
NNGYSNDSNNGSSNDGSSNHGSSSSSSSSSSRGGGVDGAGADDGGGFDGFDGFDGFGGFD
GFDGFGGFDGFDGFGGFGGGGGDDNDLDIDRDGEVWCVQDGRVYEQGEHWEFDSCTSCSC
RDGKVVCQQVACPPVSCINPSFIDGKCCPVCLNNEDGWSPWSEWTHCSVTCGRGGQQRGR
SCNGIMPSCTGPSVQTRSCMLIKCDRKVRADGNWGLWSPWSACTTTCGEGNITRVRLCNN
PPPQKGGRGCPGSARETQSCNNTLCPIAGGWTTWTEWSLCSESCGGGLSIRQRKCLKPAP
QNGGKPCAGDAVDYESCNRQPCPIDTCLLSNPCFPGVKCTSYADGSWECGRCPLGLNGNG
THCEDENECEVEGVCVTECVNTDPGFYCLPCPPRYKGTQPYGLGMQEAQKTRQVCEPYNP
CKDNTHTCHKYAECIYLGLASEVLYKCMCAVGFAGDGFLCGEDSDLDGWPNYRLPCKQNA
TYHCQKDNCPMLPNSGQEDLDMDGQGDACDPDDDNDDIIDERDNCPLVYNPRQFDSDRDG
VGDRCDNCPFDSNPLQTDTDDNGEGDACSIDIDGDEVLNDRDNCPLVYNTDQRDTDLDGV
GDQCDNCPLLHNPLQLDSDSDLVGDMCDDNEDIDEDGHQNSLDNCPYIANSNQADHDNDG
KGDACDHDDDNDGIPDDRDNCRLVPNRDQLDSDGDGSGEACFDDFDNDSIPDALDPCPLN
QDIGSTDFRKFQVVLLDPKGTTQSDPLWVIRSQGTELLQTANSDPGIALGYDKFSAVDFS
VTFYVNTNRDDDYAGIVFAYQSSRRFYVVMWKQVSQAYWEKKPSKAFGTAGVSIKLVNST
TGPGEYLRNALWHTGNTRNQVRTLWHDPNKIGWRDFTAYRMHLIHRPKTGFIRVVVYEGR
EILSDSGAVYDHTLAGGRLGLFVFSQEHVLFSDLRYECRGERSCQNLXPDY
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggaatgagtccgctgagaggtttcccctggcttttgatatgcctctttgcagca
gctgtttgtgcaggtgtgggtggtgcaaaggtcgacaatgtgtcgtcagaaatctgtcgt
catccatgtgaggagctggtggctttgatcacagagatccatggcctacgtattgtgacc
agcagcctacttgaagatctggagagagtatcaagagaaaatgaagagatgcgtatatct
ttggctgacctgagcagcagcagcagtaacagtggctacagacacaatggcaacagtaac
agcagcagcagaaacaatggcaacagtaacagcaacagcagaaacaatggcaacagtaac
agcaacagcagaaacaatggaaacagtaacagcaacagcagcaacagcagaaacaatggc
aacagtaacagcagcagcagaaacaatggcaatagtaacagcaacagcagaaacaatggc
aacagtaacagcaacagcagcaacagcaaaaacaatggcaacagtaacagtaacagcagc
aacagcagaaacaatggcaacagtaacagcaacagcagcaacagcagaaacaatggcaac
agtaacagtaacagcagcaacagcagaaacaatggcaacagtaacagcaacagcagcaac
agcagaaacaatggcaacagtaacagcaacagcagaaacaatggcaacagtaacagcaac
agcagaaacaatggcaacagtaacagcaacagcagcaacagcagaaacaatggcaacagt
aacagcaacagcagaaacaatggcaacagtaacagcagcagcagaaacaatggcaccaga
atcagtggcagcagaaacaacggctacagtaacaatggccacagtaacaatggctacagt
aataatggctacagtaatgacagtaataatggcagcagtaatgacggaagcagcaatcac
ggcagcagcagcagcagcagcagcagcagcagcagaggtggtggtgtagatggtgctggt
gctgatgatggtggtggttttgatggttttgatggttttgatggttttggtggttttgat
ggttttgatggctttggtggttttgatggttttgacggttttggtggtttcggcggcggc
ggcggtgatgacaacgatcttgacatagacagagacggggaggtctggtgtgtgcaggat
ggacgagtgtacgagcaaggggagcattgggagtttgacagctgcacctcctgttcttgc
cgggatggaaaggtggtgtgtcagcaggtggcttgccctcctgtatcctgcataaatccg
tcctttattgatggaaagtgctgtcctgtctgtctcaataatgaagatggctggtcccca
tggtctgagtggacccactgctctgtcacctgtggacgtggagggcagcaaaggggccga
tcctgcaatggcatcatgccatcctgtaccggcccgtcagttcaaacccggagctgcatg
ctgatcaagtgtgaccgcaaggtgcgtgctgatgggaactggggcctttggtctccttgg
tctgcgtgcacaaccacatgtggtgaaggaaatattacacgagtacgtctgtgcaacaac
cctccaccacagaaggggggcagagggtgcccaggcagcgccagggagacacagtcttgc
aacaacacactctgccccattgctggaggatggacaacctggactgaatggtcactgtgc
tcagagtcttgtggaggaggcctttcaatccgccagagaaagtgtttgaaacctgcccct
cagaatggtgggaagccttgtgctggagatgctgtggactatgaatcttgtaacagacaa
ccatgtcctatagacacgtgtttgctgtcaaatccatgttttcctggtgtgaagtgcaca
tcatatgctgatggatcatgggaatgtggacgctgtccattgggtttaaatggcaatggc
actcactgtgaagatgagaatgagtgtgaagtggagggtgtgtgtgttacagagtgtgta
aacacagaccctggattctactgtctgccctgtcctcctcgctataaaggcacacagcca
tatggccttggaatgcaggaagctcagaaaaccaggcaggtgtgtgaaccatacaatcct
tgcaaagacaacacacacacctgccacaagtacgctgagtgcatttacctgggcctggca
tctgaggtcttgtacaagtgtatgtgtgctgttgggtttgccggtgatggctttttgtgc
ggtgaggactctgatctggatggctggcccaattacagattgccctgcaagcaaaatgca
acctatcactgtcaaaaggataattgccccatgctgccaaactctggacaggaagacctg
gacatggacggacagggagacgcctgtgatcctgatgatgacaacgatgacatcatagac
gagagggacaattgcccgctggtctacaaccctcggcagtttgactctgacagagatggg
gtcggggaccgctgtgacaactgtccgtttgatagcaacccactgcagacagacactgat
gacaacggagagggagacgcctgcagcattgacatagacggagatgaggttctgaatgac
cgtgacaactgtcccttagtctacaacactgaccagagggacacagacctggacggtgtt
ggagaccagtgtgacaactgtccccttctgcacaacccactccagcttgactctgacagt
gacctggtgggggacatgtgcgacgacaacgaggacatcgatgaggacggccaccaaaac
tctctagacaactgtccctacatcgccaatagcaaccaggctgaccacgataacgacggg
aaaggagatgcctgtgaccacgacgatgacaatgacggtattcccgacgaccgggacaac
tgcagactggtgcccaacagggaccagctggactctgatggtgatggcagcggagaagca
tgttttgatgattttgacaatgacagtattccagatgcgctggatccatgtccactgaac
caggatattgggtctacagacttcaggaagtttcaggttgttttgttggacccaaaaggc
acaacgcagtccgaccccctctgggtgatccgtagccagggcacagagttgctgcagacg
gccaactcggaccctggcatcgctttaggatatgacaagttcagtgcggtagacttcagt
gtgacgttttatgtgaacaccaaccgagatgacgactacgcgggcattgtgttcgcctac
cagtccagtcgccgtttctatgttgtcatgtggaaacaggtgtctcaggcgtactgggag
aaaaagccatctaaagcttttggcacagcgggagtctccatcaaactggtcaactccacc
acaggaccgggggagtatctacgcaatgccctctggcacaccggaaacaccagaaaccag
gtcagaacattgtggcatgaccccaataaaattggctggagggacttcacagcctaccgc
atgcaccttatccaccgacccaagactgggttcatcagggtggtggtgtatgagggcagg
gagattttgtccgactcgggggcggtgtacgaccacaccctggctggaggcagactggga
ctgtttgtcttctctcaggaacacgtcctcttctcagacctcagatatgagtgcagaggt
gagagatcctgtcaaaacctttaacctgactactga
DBGET
integrated database retrieval system
