Lates calcarifer (barramundi perch): 108899038
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Entry
108899038 CDS
T04895
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108899038
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Cadherin related
108899038
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GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
108899038
NCBI-ProteinID:
XP_018554803
UniProt:
A0AAJ7VI30
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Position
LG23:12440486..12455739
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AA seq
862 aa
AA seq
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MKKEKKTHALLFLVLLHFTLGQSDYAPYFHDNGPSSTNGNMALFSISEDTPVGTQIYILN
GTDPEGDPVRYGLTFEKGSKEYFRVEPKSGNVTLIQELDREKQDEISVLVSITDGRNKVV
ETVRVFVTDANDEPPEFLNLPFIIDIPEDTAPGSSIYRVQAVDKDMGSGGSVSYYLQSIP
FAKFTIDGHSGILRVKPGETLDYETTPTHFVTVVARDGGGKYKGKHQVLTSTATITINVI
DAQDMPPSFIGTPYFGYIYEVSVPGSEIFTVYAKDGDQGTPNLIHYSIINGSDGVFDINS
TSGCITLTTYPSLLKNELYEIKVKASEVGPNDQLLDYDITTVTVRVVDLNNHPPTFYGEN
GPQSKFEVTMYEHPPAGEILRGFKITVNDSDQGANAKFKLRLVGPGRVLRVVPQTVLNEA
QVTIIVEDTSGIDYEKGPTLSFKLLAVEIDTPERFSATADIVINLLDTNDNVPKFTSEYY
IARVPENSPGGSSVASVTANDPDSGPWGEVKYTIYGSGSDLFSIHPTTGLISTQPWTSLD
AEVRSKYNFYVKAEDSEGKYGLAEVFVTVTDMNDHPPEFDDKLLEKTMIIGTPVKVEAVD
EDAESPNNVIEYSIMTADPDNAFDINANTGEIKLKPYIKSMEIVQNITRQKDCRWSLVVQ
ARDRGSPSFSTTAVVNIDITEATPLKGPMAAFLMKSRDNPMRALGMVTVIISMLVGVTVL
FSTAMYMRNSKSNRIMPARRIIKRRPRDQQPWTFKMPGVKFNDPADKFVIGDPESGPERN
TSSPRPKLLPPSAPCLPPPPPSNTRPSDRPRAVPTISGALASKGSKKAKSNRRKEGNISS
ALVSELKMKLEQKIIESNQGYY
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaaaagaaaacgcatgctttactgttcctcgtcctgcttcacttcaccttg
gggcaatcagactatgctccatattttcacgataatggacccagcagtacaaatgggaat
atggccttgttcagcatctctgaagacacaccagttggtacacagatatacatcctgaat
ggcacagacccagagggggatccagtgcgatatggtctgacttttgaaaagggttccaaa
gaatatttcagggtggaacccaaatctggaaatgtgactctaattcaggagctcgacaga
gagaaacaagatgaaatctcagtgctcgtgagcataacggatggtcgaaataaagttgtt
gagacagtgagagtgtttgtcactgacgccaatgatgaaccacctgaatttctcaacctg
cctttcatcattgatattccagaggacactgctccaggaagtagcatctacagagtccaa
gcagtggataaggatatgggctcaggaggcagcgtctcatattatttacagagcatccca
tttgccaagttcaccattgatgggcacagcgggatcctcagagtcaaaccaggcgagact
ctggactacgagaccacgccaacgcattttgtgacagtggttgcaagggatggaggagga
aagtacaaggggaagcatcaggtgttgacctccacagccaccataacaattaatgtcatt
gacgcacaagacatgccgccatccttcataggaaccccttactttggctacatttatgaa
gtctcagttcctggttctgaaatatttactgtgtatgctaaagatggagatcaaggcact
cctaacctcatacattattccattataaacggtagtgacggtgtctttgacataaatagc
actagtggatgcatcaccctgacaacgtatccatctctgctgaaaaatgaattatatgaa
attaaagtcaaggcatctgaggtaggcccaaatgatcagctgttggactacgacatcacc
acggtgacagttcgggtggtggatctaaacaaccatcctccaaccttttacggagaaaat
ggaccacagagcaagtttgaggttaccatgtatgaacatccacctgcaggggagatcctc
cggggctttaagatcaccgtcaatgactccgatcagggagcgaacgctaaatttaaactg
agacttgtggggccgggccgagtgctgcgagtggttcctcagacagtcctcaatgaagca
caggtgaccatcattgtggaagacacatctggcatcgactatgaaaagggaccaaccctt
tcttttaagctgctggcagtggagatcgacacccctgagcggttcagtgcgaccgccgac
attgtgatcaacctgctggacacaaacgacaatgtccccaaattcacatctgagtattac
atcgccagggtccctgagaactcccctggaggctccagcgttgcatctgtaacagcaaat
gatccagattcagggccttggggtgaagtcaaatacacgatttatggatcaggatcagat
ttgttttccatccacccaacaacgggcctcatctccacgcaaccctggaccagcctggat
gcagaggtcaggtctaaatacaacttctacgtcaaggccgaggattcggaggggaagtat
ggcctggctgaagtctttgtcactgtcaccgacatgaacgaccaccctccagaatttgat
gacaaactcctggagaagaccatgatcattggtacacctgtcaaagtagaggcagtagat
gaagatgccgagtctccaaacaacgtcattgagtactccatcatgacagccgatcctgac
aacgcgtttgatatcaacgccaacaccggggagatcaagctgaagccgtacatcaagtcc
atggagattgtgcaaaacatcaccaggcagaaggactgcaggtggtctctggtggtccag
gccagggaccgaggctctccgtctttcagcacaacggccgtggtcaacatcgacatcacc
gaggcgactcctctcaaggggcctatggcggcctttttaatgaaaagtagggacaatcct
atgagagctctaggcatggtcactgttatcattagcatgttggtaggggtgactgtgttg
ttctctacggctatgtacatgcgcaactcaaagtccaacaggatcatgccggcacgtcgc
atcattaagaggcgacccagggaccagcagccctggaccttcaaaatgcccggtgtcaaa
ttcaacgaccctgcggataagtttgtcatcggcgacccagagagcggccccgagcggaac
accagcagcccccggccgaagcttctgcccccgagcgctccttgtttgccccctccaccc
ccatctaacacgcggcccagtgacaggccccgggcagtccccacgatatccggcgcgctg
gcctccaaaggctcaaagaaagcgaaatctaaccgccgcaaagaaggaaacatcagctct
gctttagtgtcagagcttaaaatgaagctggagcagaaaatcattgaaagcaaccaaggt
tattattaa
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