Lates calcarifer (barramundi perch): 108899168
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Entry
108899168 CDS
T04895
Symbol
frmpd1b
Name
(RefSeq) FERM and PDZ domain-containing protein 1 isoform X1
KO
K23954
FERM and PDZ domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108899168 (frmpd1b)
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Other domain-containing proteins
FERM domain-containing proteins
108899168 (frmpd1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FERM_M
RA_2
PDZ_6
PDZ
FERM_C_FAK1
FERM_f0
DUF6288
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108899168
NCBI-ProteinID:
XP_018554964
UniProt:
A0AAJ7QG08
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Position
LG8:11125306..11151150
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AA seq
1721 aa
AA seq
DB search
MEEKERCRSRSPARRASRVQQVVGTIIRRTRESLSRERLLGDGRSQRSNSLSNQNFQAKL
TLQITRDPVLDSSTGHGFTLTTNAPLLVRDVATGSPADGILFPGDQVLQINDTVLEDLST
EQVENILRDLEDCINVTILRHMTNPKSSIMSAEKRARLRSNPVKVRFAEEVVVNGHTQGN
SLLFLPNVLKVYLENGQTKAFKFDNTTTVKDIVLTLKDKLSIRAIEYFALVLEQQYSITK
LLLLHEDEFIQKVVQKKDSHDYRCLFRVCFIPRDPVDLLQDDPSTFEYLFLQSVGDVLQE
RFAVEMKCNTALRLAALHMHERLDSCGQTRTSIKSITKEFGLDSFISPTLLSNMREKDLR
KAISYHLKKIQSLLEPRQKVISATQARLAYLTQLGELISYGGRSYTATMMLQDREVLVSL
LVGAKYGMSQVINHKLNVISTLVEFSSISRVELLSESDKVSLLRISLHDMKPFALLMDSL
AAKDLGCLLGGYCKLLVDPSVNVFRLGRPKVRVHRIPAEEGVCGRFAVIEGVCYESLSSY
VSRCCSDSDDSTDEDDPMDSQNYKRPDPASQDWEERRREEEEKRREEERKEREEHKGKQE
VKIIVTTEGKENEGEEEGGATGSGLRKFSIMDEEMNLETTWYHTDPRVTSSFSSLSSGSL
SAALEESSATAKAPSHVDTLRGQRTVEDLPSLDVHHPYLLEPKHRQGPLRPTNLNYRGND
NSCLCFAELSKADFLPSPPEATSDDDDDDDEEEEEERGVEALRRISKIPSSRDLRMIDSI
PFQRSPIKKKKKIPPKVPLRTSSIPGHKAGQTEQRLSKDEEGLFLTPSPNPKPALLVKET
ASESEDEFFDAQERFTPPVPDLSDAELADRRNANRLSGTWNGVPAAPGKEPSSPLANKTQ
SSKIKREVETLKGPTNKFTNQQPSPPKPSQKPEVKVKPPLAPKPQLPPKPQIIPPKSPQH
GRSYAHCNGDASGRLSSELLEMEPDTMEFKSVTSGSGGLPLSSPLITAVRCSKQPLSTVP
PQTEEKGKRQENSPKQNKDLRHENGAHVISKANVSDEKETPKVEQKSNGTALPLKRPPNL
PPIPRSNSGTKLAPPPVPPKPTSPTSLHPLSLPASSPVSPTDPNKGIFKDSGSPNGIHPW
RSCNGSIQSGPRRVSLSHESLSPKNTDAPLTLTTSLTSTTSKGVGGLESREPGRSGSGSD
LRTSSSSLGGRLPASALRGKIQALPWYMTRSQEILGTLDYASTSSINGDTSGFGSGLSVA
SGLSDLNKTPVKEKETVASKSGGKGNILEDGAEVVIATIKEAQDVTSHMKKANGTNGSHP
NLTFKENSAHSGSVSSEQPQSRPHSAVGLGGVSSMQIGGDSPTSSLADTTPPQQHREACG
CRTVYANCFSGDTEDGVSFDEELTVYEFSRRTRPKPARQPLVPSPTTPPPNPNILSLLRD
NPRPLSTFSTASSELSPLVSRPVSPTTSFGGPLRSLTNKNYGGLKGGFASLRQDIDQLLL
VLERGALEQQQQALSQDSKQDMSGIKVGPDLNHNGTEDSTNPASGSNCTGTSPTTMTEAE
RSLLQAEARRLASGCQRATRVGWAPDEALRSLSNSFSALVQLSAACLRTNPCPGCDMCHN
ASLVHKDEDDDSQEAMDKLKEIVGLYREFVGAVETAGTGSGVGSKSVGLTGSGQGQGEGD
GVRLLAKRCTVLISSVFALTQLFRTRTLDTSDTPGHVPLNF
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggagcgatgtaggagcaggtctccggctcggagggccagtcgggtgcag
caggtggtgggaacaataatccggcgcacccgagagtcgcttagcagagagcggttgcta
ggcgatgggaggtcgcagcgctccaacagtctgtccaatcagaacttccaggccaagctg
acgctgcagatcaccagggacccagtcctggacagcagcactggacatggcttcaccctc
accacaaacgctcccctgctggtcagggacgtcgccacagggagtcctgcagatgggata
ctgttcccaggggaccaggtgctgcagattaatgatacagtgctggaggatttgagcaca
gagcaggtggaaaacatcttaagggacttggaggattgtatcaatgtgactatcctgcgg
cacatgacaaatcccaagtcatccatcatgtcggcagagaagagagctcgtctgaggagt
aatccagttaaagtgcgctttgcagaggaggtggtggtcaacgggcatactcagggaaac
tctcttctcttcctgcccaacgtcctaaaagtctatttggagaacggacagaccaaggcc
ttcaagtttgataacaccaccaccgtcaaggacattgttctgactctgaaggataaactg
tccatccgggccatcgagtactttgccctggtgctagagcaacagtacagcatcaccaaa
ctgctgctgctgcatgaagacgagttcatacagaaggtggtgcagaaaaaagactcccat
gattaccgatgcttgttcagggtttgtttcattcccagagaccccgtggacctgcttcag
gacgacccctctacctttgagtacctatttttacagagtgttggggacgtgctgcaggag
cgttttgcggtggagatgaagtgtaacactgcgcttcgcctggcagcgctgcacatgcat
gagagactagatagctgtggacagaccaggacctctatcaagagtattacgaaggagttt
ggcctggacagcttcatctctcccacgctgctgagcaacatgagggagaaggacctgagg
aaagccatcagctaccacctcaaaaagatccagtccctgctagagccacgccagaaggta
atatctgctactcaggctcggttggcctacctcactcagctgggagagctcatttcatat
ggtggacgatcatacacagctacgatgatgcttcaagacagggaggtgttggtcagcctg
ctagttggagccaagtatgggatgagccaggtcatcaaccacaagctcaatgtgatctct
acactggtcgagttcagcagcatcagccgagtggagctgctctcagagtcggacaaagtc
agcctactgcgaatctcactgcacgacatgaagccatttgccttactgatggactctctg
gcagccaaagacttagggtgtctgctgggaggctactgcaaactcctggtggatccaagt
gtcaatgtcttccgtctggggcgcccaaaagtgagggtgcaccggattcctgctgaagaa
ggtgtgtgtgggaggttcgccgtaatagagggcgtgtgctatgaatccctatcaagttat
gtgtctcgctgctgtagtgactcagatgactcgacagatgaggatgacccaatggattct
cagaattacaagcgtccagaccctgcaagtcaggactgggaagaaaggaggagagaggag
gaagagaagaggagagaagaagagaggaaagagagagaggagcacaaaggcaaacaggaa
gtgaagataatagtgacaacagaaggtaaggaaaatgaaggcgaagaggaaggtggagca
acaggaagtggtctgcgcaaattcagtattatggatgaggaaatgaacctggagaccacc
tggtatcacactgacccacgggtcaccagcagcttctccagcttgtccagcggctccttg
agcgctgcgctggaggagagcagtgccacagctaaagccccgtctcacgtggacacgctc
cgtggccaacgcacggtcgaggacctgccaagtttggatgttcaccacccctacctctta
gagccgaaacaccgccagggacccctgagacccaccaacctcaactaccgcggcaatgac
aactcttgcctttgctttgctgagctctccaaggccgatttcctccccagcccacctgag
gctaccagcgatgatgacgatgatgatgatgaggaggaggaggaagagaggggagtggag
gcactcagacgcatctccaagatccctagctcaagagatctgagaatgattgacagcata
ccctttcaaagatcaccaattaaaaaaaagaaaaagatccctcccaaagtccctctaagg
acaagttcaattcccgggcacaaagcaggacagactgagcagcgcctctccaaggatgaa
gagggtctattcctgacaccttcacccaaccctaaaccagctcttttggtcaaggagact
gcctctgagtctgaggatgagttttttgatgcacaggagagatttactcccccagttcct
gatctatcagatgctgaattggcagaccggcgaaatgctaatcggttgagtggtacctgg
aatggtgttccagctgccccagggaaagagccatcctcccctcttgcaaataaaacccaa
tcctctaaaataaagagggaagtggagacacttaaagggcccacaaataaatttaccaac
caacagcccagtccaccaaagccatctcagaaacctgaagtcaaagtcaaaccaccactg
gcaccgaagccccagctgcctcccaaacctcagatcattcctcccaagtccccccagcac
gggagatcgtatgcccactgcaatggggatgcctctggacgtctttcttctgaactcctg
gaaatggagccagacaccatggagttcaagtctgtcacatctgggtcgggtggattgcct
ctctcgtcaccactgatcacagcggtgaggtgcagcaagcaacccctatccactgtacca
ccacaaactgaagaaaaggggaagaggcaagaaaacagcccaaaacagaataaagatctg
aggcatgagaatggagcacatgtgatttccaaagcaaacgtttcggatgaaaaggaaact
cctaaagttgagcagaaaagcaatgggactgccttacccctaaagaggccaccaaaccta
ccccctatccctcgttctaattcaggtacaaagctagctccccctccagtgccgcctaaa
cccacttctcccaccagtctccaccccttgtcactacctgctagctctcctgtctcccct
acggatccaaacaaagggatcttcaaggatagcggaagtccaaatggaattcatccttgg
agaagctgcaatggcagcatccagtcaggaccccggagggtctctctgagccacgagagc
ctgtcacccaaaaatacagatgcacctctcacccttaccacatcactcacctcaaccacc
tctaaaggtgttgggggcctagaaagcagagaacctggaagatctggatcgggatcggac
ctgaggactagctcctccagtcttggaggcaggttaccagcctctgccctgagagggaag
atccaggctctgccgtggtacatgacccgttcacaggagattttgggaactctggactat
gcctccaccagctccatcaatggagacacatctggctttggctctggtttgtctgtagcc
agcggtttatcagacttaaacaaaacccctgtcaaggaaaaagagactgtagcctcaaaa
tcaggagggaaagggaacattttagaggatggagctgaggttgtcatagccaccatcaaa
gaggcccaggatgtgacctcacacatgaaaaaggccaatgggacaaacggctcacaccct
aatctgacttttaaagagaatagtgcacacagtggcagcgtttcttcggagcagcctcag
tcacggccccactctgctgtggggttgggaggggtgtccagcatgcaaattgggggtgac
tcaccaacctcttcactcgcagacaccactccaccccagcagcaccgagaggcgtgtggc
tgccgcaccgtttacgccaactgtttcagcggggacaccgaggatggcgttagctttgat
gaggagcttacggtttacgagttctcccgccgcacacggcccaaacctgcccgacagcca
cttgtcccttctcctacgacacctcctccaaaccccaacattttgtctctgctgagagac
aacccccgcccactctccactttctccaccgcctcctctgaactcagtcccctagtttca
cgtcccgtttcccccacaacctcttttggtggtcctcttcgttctcttaccaacaagaat
tatggcgggctgaagggaggttttgcctcccttcgtcaagatatagatcaacttctgctg
gtcttagagaggggagcacttgagcaacagcaacaagcactaagtcaagactcaaagcag
gatatgtcaggcataaaagtagggccagacttaaatcacaatggaactgaggacagtact
aacccagcatcaggttcaaactgtactgggacaagccctaccaccatgacagaggcagaa
aggagtcttcttcaggcagaggctcgacgattggcatctgggtgtcagcgggccacccgt
gtgggctgggctcctgatgaagccctacgttctttatccaacagtttcagtgctctggtt
caattgtcagcggcctgcctgcgaacaaacccctgcccgggctgcgacatgtgccataat
gcaagtctggtccacaaggacgaggacgatgacagtcaggaggccatggacaagctaaag
gagatagtgggtctgtaccgggagtttgtcggggctgttgagacagccggaaccggcagt
ggggttgggagtaagagtgtgggcctcactggatctggacagggtcagggggagggcgac
ggggtgaggctactggccaaacgctgcaccgtgctgatctcgtctgtattcgcactcaca
caactcttccggacacgcacactagacacctcggacacgcctggccacgtacctctcaac
ttttga
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