Lates calcarifer (barramundi perch): 108899176 Help Entry 108899176         CDS       T04895                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism lcf  Lates calcarifer (barramundi perch) Pathway lcf03040   Spliceosome lcf04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:lcf00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     108899176   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     108899176  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:lcf03041]     108899176    04121 Ubiquitin system [BR:lcf04121]     108899176    03400 DNA repair and recombination proteins [BR:lcf03400]     108899176 Enzymes [BR:lcf01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      108899176 Spliceosome [BR:lcf03041]  Complex B   Other components    Prp19 complex     108899176  Complex C    Prp19-CDC5 complex     108899176 Ubiquitin system [BR:lcf04121]  Ubiquitin ligases (E3)   U-box type E3    108899176 DNA repair and recombination proteins [BR:lcf03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     108899176 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_SPT8 U-box Beta-prop_Vps41 PROPPIN Beta-prop_DCAF4 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N B-prop_COPA_B_2nd Cytochrom_D1 Ge1_WD40 zf-Nse ATG16 Motif Other DBs NCBI-GeneID:  108899176 NCBI-ProteinID:  XP_018554976 UniProt:  A0A4W6BZN0 LinkDB All DBs Position LG8:11085811..11091515 Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVAPQAVPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTNKVLT GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCV QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT GVAFGENAQFLTSAGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctctggtttgtgcaatctccaacgaggtgccggagcacccgtgcgtctctccggtg tccaaccaggtgtttgagcgcaggctgatcgagaagtacatcgcggagaatgggacggat ccgatgaatggacaaccgctgtctgaggagcagctcgtagatatcaaagtgtcccatcct attagaccaaaggcaccatcagcaacaagcattcctgccattcttaagtcccttcaagat gagtgggatgctgttatgcttcatagcttcaccttgcggcagcagctgcagactactcgc caggaactgtcgcacgccctctaccagcatgatgccgcctgcagagtcatcgctcgactc accaaagaggtcactgctgcgagagaagctcttgccacactcaaaccccaagctggattg gttgcccctcaggcagttcccgcctctcagccagctgcagcaggtgctggtggagagcct atggagattagtgaacaggtgggaatgacccccgagatcatccagaagctccaagacaaa gcgactattctcaccacagagagaaagaagagaggaaagactgttccagaggagctggtt agagctgaggatctcagcaaataccgccaggtggcctcccatgctggtcttcatagtgcc agtgttcctggtattctggctctggatctgtgtccctcagacaccaacaaagtgcttacc ggcggagctgataagaacgttgtggtgtttgacaagaatgaggagcagattgtggcaaca ctcaagggtcacacgaagaaggtcacctctgtcatttaccatccatctcagtctgtggtc ttctctgcatctccagacaccaccatccgtgtgtggtctgtcactggaggaaactgtgtc caggtggtccgtgctcacgaggcaggtgtcactggactctccctacatgctactggagac tacctgctcagctcctctgaagatcagtactgggccttctctgacatccagactggtaga gtcctcaccaaagtcactgatgaaagtgctggctgtgctctcacctgtgctcagttccac cctgatggtctcatttttggcactggtacggctgactcccaaattaagatttgggatctg aaggagcgcactaatgtggccaacttccctggccactctggccccgtcacctccattgct ttctctgagaacggatactatctggccacaggtgcccaggatagctcgctgaaactgtgg gatctgaggaagctgaagaacttcaagacaatcactctggacaacaactatgaggtgaag tcccttgtgtttgatcagagtggtacctacctggctgtaggagggtctgacattcgtgtc tacatctgcaaacagtggtctgaggtcctcaacttcacagaccatacaggattggtgact ggagtggcctttggagagaacgctcagttcctgacctctgcaggaatggatagaagcctc aaattctacagtttgtag

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