Lates calcarifer (barramundi perch): 108899284
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Entry
108899284 CDS
T04895
Symbol
col10a1b
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
lcf
Lates calcarifer (barramundi perch)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
108899284
NCBI-ProteinID:
XP_018555175
UniProt:
A0A4W6DP42
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Position
LG7_1:21633548..21639591
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AA seq
660 aa
AA seq
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MDLRVTSLLLVLLALAEATPDRYYHVPKVSKTPYPVKSHAVAGEPGPPGAPGEPGPMGPP
GPPGKSGMGHTGPQGPPGPPGPPGFSQAGKPGTPGGPGKPGTPGIPGDRGAPGATGAMGP
RGAPGAPGTPGPAGLSSVGKPGPSGIPGAMGPRGEPGLKGHPGIPGLPGAKGERGIGVPG
VQGPSGPVGPMGPAGMPGKPGVGKPGTPGYPGEPGKAGMPGRDGAPGAMGIPGQKGHTGP
PGTGAPGKPGQNGTPGMPGPMGPKGPQGPAGQPGSPGMPGVGKTGEPGTPGSRGAPGTPG
TTGQKGEPGPTGFTGQPGAPGPIGPAGPQGARGFQGEGGPPGPKGDTGMVGAPGPRGTKG
EMGAQGFTGKPGVPGAVGPPGMPGHNGAQGPKGSQGHAGAPGLPGANGAPGLKGHTGPPG
APGKSGENGRPGPMGPGGPPGPAGPSGLKGHPGLPGPPGPAGLTAKGISGPQGPPGIPGA
RGHDGLPGPVGPPGPPGPPGAPGEMIYHHEKSMPIKSHEVVMSHEMMKAPMSAFSAVLTT
AYPPAATPIQFNQVLYNGEHHYDSHSGVFTCQIPGLYYFSYHIHVNGANALVALYKNEEP
ILFTYDEYNKGFLDQMSGSAVLMLHAGDRVYVQVPDEESNGIFAADNVHCAFSGFLIAST
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggtaacaagccttctcctcgtcctcctagctttggctgaggcaacccct
gataggtactaccatgtgccaaaagtaagcaagactccctaccctgtcaagagtcacgcc
gttgcaggtgagccaggtcccccaggtgctccaggtgaaccaggaccaatgggaccacct
ggacctccaggaaagagtggtatgggacatactggaccacagggcccaccaggacctcct
ggaccccctggtttctctcaagcaggtaaacctggaaccccaggtggccctggaaaacca
ggtacccctggcatccctggtgacagaggtgcacctggcgcaactggagcaatgggtccc
agaggtgcacctggtgcacctggaacacctggacctgctggactttcttctgttggaaaa
cctggaccatctggcattcctggagcaatggggccaagaggagagcctggcctaaagggt
catcctggtattcctggccttcctggggccaaaggagagagaggtattggagttcctggg
gttcaaggaccatcaggtccagttggaccaatgggtccagctggtatgcctggcaagcct
ggagttggtaaacctggtacccctggctaccctggagagcctggcaaggctggcatgcca
ggaagagatggtgctcctggggcaatgggtatcccagggcaaaagggtcacactggtcct
ccaggcacaggagcaccaggaaaaccaggccagaatggtaccccaggtatgcctggacct
atgggacctaaaggtccacagggtccagctggtcagccaggctctcctggcatgccaggt
gttggcaaaaccggtgaacctggaacaccaggcagcagaggagcccctggtactccagga
accactggtcaaaaaggagaaccaggtccaactggttttacaggtcagccaggtgctcct
ggtcctataggcccagctggtccacagggtgcaagaggattccagggtgagggaggccca
ccaggacccaaaggtgacactggtatggtgggtgcaccgggcccaaggggaaccaaaggt
gaaatgggagctcagggtttcactggaaaaccaggtgtccctggggcagtaggtcctcca
ggaatgccagggcataatggtgctcagggtccaaagggttcacagggccatgctggtgcc
ccaggactcccaggtgcaaatggcgccccaggactaaaaggacacacaggtcccccagga
gcaccaggaaaaagtggtgagaatggaaggccaggacccatgggaccaggtgggccccct
ggtccagcaggtcccagcggacttaagggccatccaggtcttccaggcccacctgggcca
gctggcttaacagctaaaggcattagtggcccacagggtccacctggaattccaggtgca
agaggtcatgatggtctcccaggccctgtcggtcctcctggtccacctggcccacctggt
gcaccaggtgagatgatctatcaccatgagaagagcatgccaatcaagtcccatgaggtt
gtgatgtctcatgagatgatgaaggcccccatgtctgccttcagtgctgtgctgaccact
gcgtaccccccagctgcaactcctattcagttcaaccaggttctgtacaatggggagcac
cattatgactcccatagtggtgtgtttacttgccagatcccaggcctctactattttagc
tatcacattcatgtcaatggtgccaatgcattggtggccctctacaaaaatgaggagcca
attcttttcacctatgatgagtataacaagggcttcctggatcagatgtcaggcagtgct
gttcttatgctgcatgccggtgacagagtctatgtccaggttcctgatgaggagagtaat
ggtatatttgcagcagataatgttcattgtgctttctctgggttcttgattgcctcaacg
tga
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