Lates calcarifer (barramundi perch): 108899324
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Entry
108899324 CDS
T04895
Name
(RefSeq) probable ribonuclease ZC3H12D
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108899324
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108899324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
UBA_N4BP1_C
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
108899324
NCBI-ProteinID:
XP_018555236
UniProt:
A0AAJ7QG36
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Position
LG7_1:complement(22396813..22409149)
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AA seq
605 aa
AA seq
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MSQNKEAERIPQTDSPEKTEERRHTGEKSASIMDHQQHAKVERFLKLGYSHSDILRVLES
LRHDAQTNDILEELIKTCHTRTYNNKSVPNSPKLVSRGCSPSPSQPRPGPDREPAAGFRP
VVIDGSNVAMSHGDKKVFSCQGLQLAVNWFWDKGLRDITVFVPLWRKEQPRPDAPITDQH
ILHELERRKILVYTPSRCVKGKRVVCYDDRYIVKLAFDSDGIIVSNDNYRDLQTENPQWK
RFIEERLLMYTFAIDKFMPPDDPLGRNGPTIDDFLRRKPWIPDNKLQHCPYGKKCTYGVK
CKFYHPERANQSQLSVADELRALRDRAKNFSPKLSLQDTHFCPTVYQPEHRYNSSTPPPL
SIEDQSHRASPSEQFIYQKDSSSLRSQANTSLHHCPSSDVDEAFSSMESSMSRLYIHDMP
YSMEHLPHSYSSGVPSYSLSHDDHSLSGSYSKNNQRPCLSGGGYYPHQNCSLSCKHPPVC
SQCRCGHQHTRMSQQPAWGSCPALPPHNGEYPGHVSEKLYFRQPSNRHTHSLPRDPWVQS
SLSDARLNGRAKSPFNEQRRALRSQLSTLFPQSVVEQVMNTYPDVSDTSELISLIQNYRT
SHISL
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaataaggaggcagagaggattccccagacagacagtcctgagaagacagag
gagaggagacacacaggagagaaatcagcatccataatggaccaccagcagcatgccaaa
gtggagcgatttctcaagttaggatactcgcacagcgatatcctgagggtactggagagc
ctccgccatgatgcccagaccaatgatatcctggaggagctgattaagacctgtcacact
cgtacttacaacaacaaaagtgtccctaacagccccaagctggtgtccagaggctgcagc
cccagtcccagtcagcccagacctggaccagacagagaaccagctgctggcttcagacca
gtggttatagatggaagcaatgtggccatgagccatggcgacaagaaggtgttttcgtgc
cagggcctccagctggcagtgaactggttctgggacaaagggctgcgcgacatcactgta
ttcgttcccctgtggaggaaggaacagccacgaccggatgcgcccatcacagatcaacat
attctccatgagctggagagaaggaagatcctggtgtacacgccatctcgctgtgtgaag
ggtaagcgggtggtgtgctatgatgaccggtacattgtcaagctggccttcgattcagac
ggcattattgtgtccaacgacaactaccgcgaccttcagacggaaaatccccagtggaag
aggtttatagaagagaggctgctgatgtacaccttcgccattgacaagttcatgccccca
gatgatcctctgggtagaaatggtcccaccattgatgattttctgagaaggaagccctgg
atcccagacaacaagctgcagcactgtccatacggaaagaagtgtacttatggagtgaag
tgcaagttctaccaccctgagcgagccaaccaatcacagttgtctgtggccgatgagctg
agggcactgagagacagggccaagaacttctcacccaaactgagtttgcaggacacacac
ttctgccccactgtgtaccagccggagcacaggtacaactcatctacccctccgcccctg
agcatagaggaccagtcacacagagcttcacccagtgagcagttcatctatcaaaaagac
tccagcagcctgagaagccaagcaaacacaagcctccaccactgtccaagttcagacgtg
gacgaggccttcagctccatggaaagctccatgtccaggctctacatccacgacatgccc
tatagcatggagcaccttcctcacagctatagcagtggggtgcccagctacagcctgagc
cacgatgaccactccctctcagggtcatacagtaagaacaaccaaaggccctgtttgagt
ggaggaggttactaccctcatcaaaactgctcgctgtcctgcaaacacccccctgtgtgc
agccagtgcaggtgtggtcaccagcacaccaggatgtcccaacaaccagcatggggctcc
tgcccagcactgcctccacataacggggaatatcctggccatgtttcagaaaagctgtat
ttcaggcagccctccaacagacatacccacagcttgcccagggacccatgggtgcagagc
agcctctctgatgccaggctgaacggccgggccaagagcccattcaatgagcagaggagg
gccctgaggagccagctgagcaccctcttcccccagagtgtggtagagcaagtcatgaat
acttacccagatgtctcagacacatctgaactgatttctctcatccagaactacaggact
agccacatatccctctaa
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