Lates calcarifer (barramundi perch): 108899367
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Entry
108899367 CDS
T04895
Symbol
arpc1a
Name
(RefSeq) actin-related protein 2/3 complex subunit 1A
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
lcf04517
IgSF CAM signaling
lcf04530
Tight junction
lcf04810
Regulation of actin cytoskeleton
lcf05100
Bacterial invasion of epithelial cells
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108899367 (arpc1a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108899367 (arpc1a)
09144 Cellular community - eukaryotes
04530 Tight junction
108899367 (arpc1a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108899367 (arpc1a)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108899367 (arpc1a)
05100 Bacterial invasion of epithelial cells
108899367 (arpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108899367 (arpc1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108899367 (arpc1a)
Membrane trafficking [BR:
lcf04131
]
Others
Actin-binding proteins
Arp2/3 complex
108899367 (arpc1a)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
108899367 (arpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_RIG_2nd
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR75_1st
EIF3I
Beta-prop_HPS5
Beta-prop_EML
Rax2
RMC1_N
Beta-prop_IFT122_1st
Beta-prop_SPT8
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
108899367
NCBI-ProteinID:
XP_018555282
UniProt:
A0A4W6CRC1
LinkDB
All DBs
Position
LG5:6114056..6121380
Genome browser
AA seq
370 aa
AA seq
DB search
MSLHQFLLEPITCHAWNRDRTQIAISPNNHEVHIYKKSGNQWVKTHELKEHNGHITGIDW
APKSDRIVTCGADRNAYVWSQKEGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI
SVCYFESENDWWVSKHIKKPIRSTILSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVEEKP
GPTPWGSKMPFGAVLAEFGGAGGGGWVHSVSFSSSGNRLAWVSHDSTVTVVDSSKTTSPS
QLKTEFLPLLSVIFVSENSLVAAGHDCCPMLFRCDDGGTLTFVSKLDLPKQSIQRNISAM
ERFRNMDKRATTEDRNTALDTLHQNSITQVSIYEGDKRDCRKFCTTGIDGAMTIWDFKSL
EASIQGLRIM
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcatcagtttctgctggagcccatcacctgccacgcatggaaccgcgacagg
acacaaattgccatcagtcctaataaccatgaagttcatatctacaagaagagtggcaac
cagtgggtcaagacccatgaattgaaggagcacaatggacacataacaggtattgactgg
gctcccaaaagtgaccgtatagtgacatgtggagcagatcgtaatgcctatgtgtggtcc
cagaaggaaggggtatggaagcccacactggtcatcctcaggatcaaccgagctgccacc
tttgtcaagtggtctccactggagaataagttcgcagtcggcagtggggctcgactcatc
tctgtctgctactttgagtctgagaatgactggtgggtgagcaagcacatcaagaagcca
atccgctccaccatcctcagtctggactggcatcccaacaacgtcctgctggctgctgga
tcctgtgacttcaaatgcagggtgttctcagcctacattaaggaggtggaagagaaacca
ggccccacaccctggggcagcaagatgccatttggggctgtgctagcagaatttggagga
gcgggtggagggggttgggtccactctgtctctttctcatcctctggtaaccgtctggcc
tgggtcagccatgacagcactgtcactgtggtggacagctctaagactaccagtccttcg
cagctgaagacggagttccttcctctcctcagtgtcatttttgtttcagagaacagtcta
gtagctgcgggccacgactgttgccccatgctgttccgttgtgatgacggtgggacgctg
acatttgtgtcaaagctcgacctccccaagcagagtatccagaggaacatctctgccatg
gagcgcttcaggaacatggacaagagagccaccaccgaggaccgcaacactgccctggac
acactgcaccagaacagcatcacccaagtgtctatctatgagggagacaaaagggattgt
cgcaagttctgcaccacaggcatcgatggagcaatgaccatttgggacttcaagagtcta
gaagcttctatccagggtctccgcatcatgtga
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