Lates calcarifer (barramundi perch): 108899485
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Entry
108899485 CDS
T04895
Symbol
syngap1b
Name
(RefSeq) synaptic Ras GTPase activating protein 1b isoform X8
KO
K17631
Ras/Rap GTPase-activating protein SynGAP
Organism
lcf
Lates calcarifer (barramundi perch)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DAB2P_C
PH_RASGAP
RasGAP
C2
Extensin_1
PH
PH_2
Motif
Other DBs
NCBI-GeneID:
108899485
NCBI-ProteinID:
XP_018555463
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All DBs
Position
LG15:5046761..5176461
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AA seq
1486 aa
AA seq
DB search
MSYVPFQDARCAVPPSYHHHHHRTHAHSFHAPSYDRPVHERPTYDRPSFDRPFFDRPSFD
RPSFDRPSYNRPLHERPIYDRPSHDRPPHDRWNPHLRVSSGNQLYMLDQEEVHPLLMRER
RSESHRNKLLRRTVSVPVEGRHHPEMDHRARRKSIATGKQPSMEVPPTAPLQPFRQSSFL
SRRLKGSIKRAKSQPKLDRTSSFRHMILPRFRSADQDRTRLMQSFKESHSHESLLSPSSA
AEALDLTLDEDAIIKPVHSSILGQEYCFEVTTASGTKCFACRSAAERDKWIENLQRAVKP
NKDNSRRVDNVLKLWIIEARELPAKKRYYCELCLDDMLYARTTSKPRTDTVFWGEHFEFN
NLPAVRNLRLHLYKETDKKRRKEKSTYLGLVSIPISSITGRQFVEQWYPVIQPSVLTKGA
GVGGGKIINASLRLKSRFQTMNILPMELYKEFAEYVTNNYRTLCAVLEPVLSVKSKEEVA
CALVHILQSTGKAKDFLSDMAMCEVDRFIDREHLIFRENTLATKAIEEYLKLIGHKYLKD
AIGEFIRALYESEENCEVDPMRTPPSVLPDHQANLRMCCELALCKIVNSHCVFPRELKEV
FASWRVRCAERGREDIADRLISGSLFLRFLCPAIMSPSLFNLTQEYPDEQTSRTLTLIAK
VVQNLANFSKFGSKEEYMCFMNEFLEMEWGSMQQFLYEISNLDSVSNAGGFEGYIDLGRE
LSILHSLLWEVMAQLSKDAIIKLGPLPRLLNDISMALRNPHLQRQPSHQTDRVQERQTER
LLSRPSFNRGISSEFQNLMMRDLNSSIDITRLPSPTSTGGVMPSRSQMSFQDRDHPHRAS
SKDMFYVSRPPLARSSPAYCTSSSDITEPDPKDSRMNSVSNLQSVDMLNSSQASIAGMGS
FGGLSSGGGGGLGSGLSSQLRAGGRLSAGSGGSSMSGGLRLSQLSQMGTTTDSLSQQQQQ
QAAAMRYPLSFQNPLFHLATADGPQQQQLHHQHSRAQPPAPLLLAPEPEPSHQTYIPQFA
HGGFSRSEDLSTLRTRDSHLGQPSIIHSHSYSDDYSRADYGRRQMSMHVQDNLQQQQQMM
GMTSQTGTSHSSLATTPPSTVQPVRQSSVAPPPTQRVKSQTSHQLSVSAAAAPTAPAKTR
PQSGNLLQSPESGYGGRQHGPRQLSVKDNTAPGLPHQQSSVRESQSPQGTTSQSTQQSPQ
QQSQQQQQHLLKPTMSKQGSQSPSTLNPPTPANERTVAWVSNMPHLSADIESSRIDREDF
KLKEYSKSMDESRMDRVREYEEEINSLKERLMMSHKKLEEYERRLLTQEQQTNKILLQYQ
NRLEDSERRLRQQQLEKDSQIKGIISRLMAVEDELRGGPVIEPKTRIFADQEDQLSSLGS
ADPGVKTENGGGGGGGGQGGGGAVTNDQGLRVSSSGISSDSSPHNGVLPQTVDPPSLPTP
HLHPSQNGELRGNQTSSPMTTSQATGTTATATTGIAEEGGVGQTQH
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatgttccctttcaagatgcaaggtgtgccgtccccccctcctatcatcatcac
catcatcgcacccacgcccactccttccacgctccctcctacgaccgtcccgttcacgaa
cgtcccacctacgatcgcccctccttcgatcgccctttcttcgatcgcccctccttcgac
cgtccctccttcgatcgtccctcctacaaccgccccttgcacgagcgccccatctacgac
cgaccctcacacgaccgtccaccccacgaccgctggaacccccatctccgtgtgagctcc
ggaaatcagctctacatgttggaccaggaggaggtacaccctttgctgatgcgcgagagg
cgctcagagtctcacaggaacaagctactgcggcggacagtcagcgttcctgttgaggga
aggcaccatcctgaaatggatcatcgcgcccggcggaagagcatagccaccgggaagcag
cccagcatggaggtccctcccactgccccccttcaacccttccgacaatccagtttcctc
agtagaaggttgaagggctcgatcaagagggctaagagtcagcccaaactggaccgaacc
agcagtttccgccacatgatcctcccccgcttccgcagtgccgaccaagacaggacccgt
ttgatgcagagcttcaaagagtcccactcccatgagtccttgctgtctcccagcagcgct
gccgaggcgctggacctcaccctggacgaggacgccatcatcaaacctgtccactccagc
atcctgggacaagagtactgctttgaggtgactacggcatcgggaaccaagtgctttgcg
tgtcgctcagctgcagagagagacaaatggatcgagaacctgcagagagctgtcaagccc
aacaaggacaacagccggagggtggacaatgtgctcaaactgtggatcatcgaggcccgc
gagcttccagccaagaaacgctactactgcgaactttgtctggatgacatgctgtacgca
cgtaccaccagcaagccccgcaccgacaccgttttctggggcgagcactttgaattcaac
aacctgccagccgtccgcaacctacgccttcatctatacaaggagacggacaagaagaga
cgcaaggaaaagagcacatacttaggacttgtaagcatccccatctcaagcatcactgga
cgtcagtttgtggagcagtggtacccggtcatccagcccagcgtcctcaccaagggagct
ggtgtcggaggggggaagatcatcaacgcatccctacgcctcaaatcccgcttccagacc
atgaacatcctgcctatggagctgtacaaggagtttgcagagtatgtcaccaataactac
cgcaccctgtgtgctgtgctggagcccgtgctgagtgtcaagagcaaagaggaagtggcc
tgtgcactggtgcatatactacagagcacgggaaaagctaaggatttcctttcagacatg
gcgatgtgtgaggtagacagattcatcgaccgagaacaccttatcttcagagagaacact
ctggccaccaaagccatagaagagtacctcaaactgattggacataagtacctcaaggat
gctataggggagttcataagggccttgtatgagtcagaggaaaattgcgaagtggacccc
atgagaacaccaccctctgtactcccagaccaccaagccaatctccgaatgtgctgtgaa
ctggcactctgcaaaatcgttaactcccattgtgttttccctcgagagctaaaggaggtt
tttgcctcctggagagtgcgctgtgctgagaggggccgggaagacatcgccgaccgcctc
atcagtggttccctctttctacgcttcctgtgtccagccatcatgtccccatcgctcttc
aacctcacccaggagtatcccgatgagcagacatcacgcacgctcaccctcatcgctaaa
gtagtgcaaaacctggctaacttctccaagtttggcagcaaagaggagtacatgtgtttc
atgaatgagttcttagagatggagtggggctccatgcagcagttcctgtacgagatctcc
aacctggacagtgtcagcaatgcaggcggctttgagggatacatcgacctgggcagggag
ctgtctatactgcacagtcttctatgggaggtcatggctcagctcagcaaggatgccatc
atcaaactgggtcctttgcctcgcctcctgaatgacatcagtatggccttgcgtaaccca
cacctacagaggcagcccagccatcagacagacagggtccaggagagacagacagagagg
ctgctttcacggccgagcttcaacaggggcatctcatccgagtttcaaaatctcatgatg
agggaccttaatagctctatagatatcactcgcttgccttcccctacctccaccggaggg
gtcatgccatcccgctcccagatgagttttcaggaccgagaccaccctcatcgagcatcc
tccaaagacatgttttatgtttcacgccctcccctggcccgatccagcccagcctactgc
acgagcagctcggacatcaccgaaccagatcctaaggattcccgaatgaacagcgtgtct
aacctgcagtcggtggacatgctcaactcctcccaggcctccatcgccggtatgggcagc
ttcggagggctgagcagcggaggcggtggcggcctggggtcgggcctgagcagccagctg
cgggccggtgggaggttgtcagctggctctggcggctccagcatgtccggcggccttcgg
ctgagccagctgagccagatgggcaccaccaccgactcgctatcccagcagcagcaacag
caggccgccgccatgcgctacccgctttccttccagaatcccctctttcatctggcgact
gctgatgggccccaacagcaacagctccatcaccagcacagccgggctcaacccccagca
cccctgctcctggctccagagcctgagccctctcaccagacctacatcccacagttcgcc
catggggggttctctcgcagtgaggacctgtccaccctcaggaccagggacagtcacctg
ggccaacccagcatcatccactcacacagctacagcgacgactacagcagggctgactat
ggacgcaggcagatgtccatgcatgtgcaggataacctccaacagcagcaacaaatgatg
ggcatgacctcccagacaggaacctcccactcctccctggccaccacgcccccctccaca
gtccaacctgtgcgccagagttctgttgccccgcctcccacccagcgcgtcaaatcccag
acctcccatcagctgtctgtcagtgcagctgccgctcccactgctccggctaaaacgcga
ccgcagagcgggaatctcctccagtcaccagagtccggctacggcggcaggcagcacggg
ccccggcagctgtccgtcaaagacaacactgccccgggcctgccccaccagcagagctct
gtcagggaaagccagagtccacagggaaccaccagtcagagcactcaacagtcaccacag
caacagtctcagcaacagcaacagcaccttctcaaacccaccatgagcaaacaggggtcc
cagtctccatccaccctcaatcccccaaccccagccaatgagcgaacagtggcctgggtc
tccaacatgcctcatctgtcggctgacattgaaagttcgcggattgaccgtgaagatttc
aaactgaaggagtactcaaagagcatggatgagtcgcgcatggacagggtacgggagtac
gaggaggagatcaactccctgaaggagcgcctgatgatgtcccacaaaaagctggaggag
tacgagcggaggctcctcacgcaggagcagcagaccaataagatcctcctacagtaccag
aatcgactcgaggacagcgagcggaggctacggcaacagcaactggagaaagactcccaa
attaaaggaataattagcagactcatggctgtggaggatgagttaaggggaggacccgtg
attgagccaaaaaccaggattttcgctgatcaggaggaccagctttcctccctgggttct
gcagaccccggtgtgaaaactgaaaatggagggggaggtggaggaggaggacaaggagga
ggaggagcggtaaccaacgatcaaggcctcagagtctcttcctcgggcatttcctctgac
agctcgccccacaatggagtcctccctcaaaccgtagaccctccctctctacccactcct
catctacatcctagtcagaatggagagctccgtggcaaccaaacatcctcccccatgaca
acgtcacaggcaactggaaccacggcaacagcaactacaggcatagcagaagaaggggga
gtaggtcaaacacaacactga
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